{"id":"W4405851506","doi":"10.1101/2024.12.18.628902","title":"Phased genome assemblies and pangenome graphs of human populations of Japan and Saudi Arabia","year":2024,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Genetic Associations and Epidemiology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Institute of Genetics; Japan Science and Technology Agency; Ministry of Education, Culture, Sports, Science and Technology; Japan Society for the Promotion of Science; National Bioscience Database Center; King Salman Center for Disability Research; Dalian Institute of Chemical Physics; King Abdullah University of Science and Technology; Japan Agency for Medical Research and Development","keywords":"Genome; Biology; Geography; Political science; Genetics; Gene","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009508944,0.000407906,0.0002936964,0.002125778,0.0003951446,0.0006215042,0.0005103489,0.0003828333,0.002053376],"category_scores_gemma":[0.004107929,0.0002592076,0.0005103749,0.002842118,0.000193417,0.0003755481,0.0006950178,0.0003029029,0.0004772407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003970202,"about_ca_system_score_gemma":0.0004008099,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.009214797,"about_ca_topic_score_gemma":0.01115358,"domain_scores_codex":[0.999537,0.0001306052,0.00004173386,0.0001867416,0.000072597,0.00003143563],"domain_scores_gemma":[0.9984348,0.0005220748,0.0002436251,0.0003067507,0.0004292357,0.00006352631],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.003600506,0.0001358308,0.3682414,0.00252231,0.001694489,0.001453831,0.004126909,0.0830328,0.2236373,0.01131131,0.01840197,0.2818415],"study_design_scores_gemma":[0.0001752286,0.0003815318,0.6594773,0.000394238,0.0008186139,0.001968868,0.002641683,0.1419351,0.05981923,0.01611177,0.1160944,0.0001821156],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8660951,0.001562333,0.08631405,0.0002581136,0.0000617753,0.000100737,0.04212322,0.001362866,0.002121772],"genre_scores_gemma":[0.7731003,0.000991536,0.1264952,0.000156104,0.00002690854,0.0001500257,0.09734068,0.0005967743,0.001142462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.009214797,"threshold_uncertainty_score":0.01832229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02203807188700242,"score_gpt":0.2619370288653077,"score_spread":0.2398989569783053,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}