{"id":"W4405852028","doi":"10.5376/gab.2024.15.0022","title":"Comprehensive Genomic Identification and Characterization of R2R3-MYB Genes in Colored Rice (&lt;i&gt;Oryza sativa&lt;/i&gt; L.): A Phylogenetic and Expression Analysis","year":2024,"lang":"en","type":"article","venue":"Genomics and Applied Biology","topic":"Microbial Metabolism and Applications","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Oryza sativa; Biology; Gene; Phylogenetic tree; Identification (biology); Genetics; MYB; Red rice; Botany; Gene expression; Horticulture","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001232316,0.0001713009,0.0002962638,0.0001824134,0.00007632995,0.0000368158,0.00009423455,0.0001918142,0.000004416305],"category_scores_gemma":[0.000004072494,0.000163673,0.0000411785,0.0002216696,0.0001945368,0.000004143621,0.0001595101,0.00005308443,0.000001739216],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000009385767,"about_ca_system_score_gemma":0.00003134411,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000587344,"about_ca_topic_score_gemma":0.00002189326,"domain_scores_codex":[0.9988461,0.00005275149,0.0003532335,0.0005485108,0.0000308686,0.0001685778],"domain_scores_gemma":[0.9995368,0.00002403869,0.0001358994,0.0002090641,0.00003833971,0.00005589868],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004887788,0.0000234049,0.000475053,0.00005992807,0.0000966865,2.331497e-7,0.0001695744,0.00001899526,0.9904884,0.001655736,0.00001108446,0.006952034],"study_design_scores_gemma":[0.0005595819,0.00007014927,0.2100106,0.00001060383,0.0002271631,0.000007679029,0.00005948399,0.0005573064,0.7505658,0.0005365583,0.03708797,0.0003071057],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9890388,0.007880074,0.002325927,0.00006001513,0.00004875584,0.0003754696,0.0002272429,0.000008349893,0.00003540409],"genre_scores_gemma":[0.989338,0.009191508,0.0005948812,0.00005583985,0.00009676805,0.00007008199,0.000603075,0.00001644993,0.00003334816],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2399226,"threshold_uncertainty_score":0.6674391,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007007828681747039,"score_gpt":0.2251996071330199,"score_spread":0.2181917784512729,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}