{"id":"W4405872266","doi":"10.1038/s43247-024-01966-8","title":"Deep terrestrial indigenous microbial community dominated by Candidatus Frackibacter","year":2024,"lang":"en","type":"article","venue":"Communications Earth & Environment","topic":"Microbial Community Ecology and Physiology","field":"Environmental Science","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; Carleton University; University of Toronto; University of Waterloo; McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada; Government of Canada; Canadian Institute for Advanced Research","keywords":"Indigenous; Candidatus; Terrestrial ecosystem; Astrobiology; Agroforestry; Biology; Geography; Ecology; Ecosystem; Paleontology; Bacteria; 16S ribosomal RNA","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","sts","insufficient_payload"],"consensus_categories":["insufficient_payload"],"category_scores_codex":[0.000567614,0.0002653961,0.0002551881,0.00006044662,0.001386227,0.00008132809,0.001808255,0.0002399885,0.009233394],"category_scores_gemma":[0.00002082337,0.0002699649,0.0001155341,0.0001894567,0.001146166,0.0002113044,0.001992778,0.001491316,0.005548011],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002533536,"about_ca_system_score_gemma":0.00002751903,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002798738,"about_ca_topic_score_gemma":0.003221574,"domain_scores_codex":[0.9971961,0.001546844,0.0003892014,0.0002899201,0.0001267266,0.0004511837],"domain_scores_gemma":[0.9966885,0.0004667063,0.00008395033,0.002618163,0.000002671046,0.0001399847],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0003262908,0.004561001,0.01173851,0.00006385846,0.0005473793,0.0000299283,0.02985616,0.00258162,0.6794904,0.0002544292,0.1746127,0.09593775],"study_design_scores_gemma":[0.0005881447,0.0002308722,0.02063997,0.00002439612,0.00007285467,0.00002912184,0.0001791865,0.001199237,0.002533144,0.0005316088,0.9735119,0.0004595935],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9902014,0.001262466,0.0009335342,0.0009836417,0.0002981425,0.0006683086,0.000124864,0.0001445801,0.00538311],"genre_scores_gemma":[0.9940852,0.001127395,0.001429019,0.0005438309,0.00003561939,0.00007859332,0.00144917,0.00003477521,0.001216406],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7988992,"threshold_uncertainty_score":0.9999753,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01305059436829422,"score_gpt":0.2362159313182356,"score_spread":0.2231653369499414,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}