{"id":"W4405924637","doi":"10.1111/ele.70031","title":"Central Taxa Are Keystone Microbes During Early Succession","year":2024,"lang":"en","type":"letter","venue":"Ecology Letters","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":25,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Toronto","funders":"University of Miami; Genomics Center, University of Minnesota; U.S. Department of Agriculture; National Institute of Food and Agriculture; National Science Foundation","keywords":"Microbiome; Biodiversity; Biology; Taxon; Ecology; Ecosystem; Keystone species; Ecological succession; Metagenomics; Microbial ecology; Evolutionary biology; Bacteria; Paleontology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow","research_integrity"],"consensus_categories":[],"category_scores_codex":[0.00008453247,0.0004719421,0.0004442712,0.000179482,0.0001883593,0.00006782781,0.0004360272,0.001530002,0.0001479132],"category_scores_gemma":[0.00001784235,0.0004629194,0.000276234,0.00008973067,0.0001897301,0.000004297204,0.0002844485,0.001558012,0.0003178708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001436002,"about_ca_system_score_gemma":0.0001194835,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00008025929,"about_ca_topic_score_gemma":0.0001938673,"domain_scores_codex":[0.9973229,0.0001526777,0.0003802484,0.0009561882,0.000114231,0.001073815],"domain_scores_gemma":[0.9990968,0.00001597507,0.0002396818,0.0005132196,0.00003669104,0.00009760498],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00001710345,0.00001257946,0.005682169,0.0002609462,0.0001081291,0.0005790121,0.00002825023,0.00000225912,0.4139522,3.044966e-7,0.5793487,0.000008323407],"study_design_scores_gemma":[0.0005009392,0.0001217416,0.1252383,0.0001599647,0.0001155202,0.0002226757,0.00001076167,6.081894e-7,0.02338514,0.000004416322,0.8496206,0.0006193072],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"empirical","genre_gemma":"commentary","genre_scores_codex":[0.6072415,0.0005180301,0.000008318468,0.3899695,0.001836561,0.0002220646,0.0001019489,0.00003870522,0.00006331535],"genre_scores_gemma":[0.1473266,0.0002614462,0.0001545602,0.8335208,0.008705563,0.00004521511,0.001555712,0.0001739433,0.008256188],"genre_candidate":"commentary","genre_consensus":null,"teacher_disagreement_score":0.4599149,"threshold_uncertainty_score":0.9997823,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.005019541463884247,"score_gpt":0.2203403643765561,"score_spread":0.2153208229126719,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}