{"id":"W4406003086","doi":"10.1101/2024.12.31.630880","title":"Persistent virulent phages exist in bacterial isolates","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Lethbridge College; University of Lethbridge","funders":"","keywords":"Virulence; Microbiology; Biology; Virology; Genetics; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004008001,0.000356265,0.0004371291,0.001506167,0.0005529256,0.001264253,0.0002121656,0.0004565452,0.001191589],"category_scores_gemma":[0.001453711,0.00024099,0.0003030789,0.001499984,0.0003843512,0.0004998663,0.0009147252,0.0004548346,0.0005159525],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001873903,"about_ca_system_score_gemma":0.0002371925,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005607767,"about_ca_topic_score_gemma":0.0006174295,"domain_scores_codex":[0.9992321,0.00007228523,0.00006995095,0.0002617754,0.0002164087,0.0001475242],"domain_scores_gemma":[0.9983882,0.0005255641,0.0004427188,0.0001934903,0.0002177695,0.0002321915],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008117259,0.0001239373,0.2624826,0.0008344816,0.0002095128,0.001075208,0.001343005,0.000323027,0.7110175,0.0008427384,0.0006968749,0.02023938],"study_design_scores_gemma":[0.00003552246,0.0004710285,0.8448804,0.0002418951,0.0003566685,0.004485564,0.002749218,0.002086399,0.1234801,0.001567088,0.01956994,0.00007618414],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9938349,0.001637094,0.001995055,0.00005179706,0.00001871161,0.00001660057,0.001437065,0.00007182673,0.0009370461],"genre_scores_gemma":[0.9922113,0.000451633,0.002551839,0.00005817648,0.00001461004,0.00001437021,0.004161053,0.00003068402,0.0005062857],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001506167,"threshold_uncertainty_score":0.003986239,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01130957061650547,"score_gpt":0.220784666036888,"score_spread":0.2094750954203825,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}