{"id":"W4406025912","doi":"10.3390/plants14010124","title":"A High-Quality Phased Genome Assembly of Stinging Nettle (Urtica dioica ssp. dioica)","year":2025,"lang":"en","type":"article","venue":"Plants","topic":"Medicinal plant effects and applications","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Queens College, City University of New York; Alliance de recherche numérique du Canada","keywords":"Urtica dioica; Contig; Genome; Biology; Genetics; Sequence assembly; Haplotype; Gene; Evolutionary biology; Transcriptome; Botany; Genotype","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003723506,0.00012992,0.0004320763,0.0001177414,0.00007701434,0.00000960746,0.0001166713,0.00006954516,0.00008669558],"category_scores_gemma":[0.0003027487,0.000104896,0.00006091666,0.00023062,0.00005612428,0.00002913689,0.0000288692,0.000171981,0.00003489316],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003182154,"about_ca_system_score_gemma":0.00009574436,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001514869,"about_ca_topic_score_gemma":0.000006236071,"domain_scores_codex":[0.9988183,0.00004786963,0.0003708726,0.000246593,0.0002633847,0.0002530225],"domain_scores_gemma":[0.9988077,0.0005560867,0.0001185997,0.0003333944,0.00005456085,0.0001296819],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0003347459,0.0004192938,0.00428612,0.0005141454,0.0001908953,0.00003630542,0.0001170985,0.00001266127,0.9802992,0.004733916,0.002814882,0.006240766],"study_design_scores_gemma":[0.00874841,0.0006548766,0.6641229,0.002088095,0.0009606018,0.00009993378,0.0003224265,0.001444879,0.2700315,0.001018256,0.04989945,0.0006087314],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9810678,0.0003206599,0.00450718,0.001669753,0.0001322919,0.0004237516,0.0001440176,0.00007546405,0.01165911],"genre_scores_gemma":[0.9973233,0.00004126348,0.0009566237,0.0004678408,0.0001190688,0.00002746323,0.0001533021,0.000009554263,0.0009016113],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7102677,"threshold_uncertainty_score":0.4277535,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02570139300882718,"score_gpt":0.3368383978434062,"score_spread":0.3111370048345791,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}