{"id":"W4406057889","doi":"10.1101/2025.01.03.631278","title":"Drastic genome reduction driven by parasitic lifestyle: Two complete genomes of endosymbiotic bacteria possibly hosted by a dinoflagellate","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Protist diversity and phylogeny","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Dalhousie University","funders":"","keywords":"Dinoflagellate; Genome; Biology; Endosymbiosis; Bacteria; Evolutionary biology; Genetics; Gene; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001011048,0.0003400562,0.0002342341,0.0003495727,0.0002148025,0.0003561421,0.0001899415,0.0003518759,0.0007983848],"category_scores_gemma":[0.0003393975,0.0001351783,0.0004512403,0.0004330319,0.0002238253,0.0003137277,0.000539007,0.0004347967,0.0002984119],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001885717,"about_ca_system_score_gemma":0.0002117178,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005073243,"about_ca_topic_score_gemma":0.0005764411,"domain_scores_codex":[0.9998883,0.000009094812,0.000008804719,0.00003982267,0.00003113623,0.00002284916],"domain_scores_gemma":[0.9997409,0.00005546488,0.00008715553,0.00003630945,0.00003213433,0.00004806443],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001415981,0.000007417265,0.005864237,0.00009131875,0.00001990589,0.0001265622,0.00009047228,0.00007354201,0.9894425,0.00008859936,0.00005027916,0.004003607],"study_design_scores_gemma":[0.00002794229,0.0004694325,0.4047857,0.00003887703,0.0002338937,0.004855667,0.0005479762,0.00186361,0.5709053,0.0006662192,0.01555672,0.00004868308],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9940233,0.0006025224,0.002616429,0.00004964144,0.000007645823,0.00001025892,0.002007071,0.00009716996,0.0005859925],"genre_scores_gemma":[0.9861186,0.0003455781,0.005635904,0.00006190647,0.000005845475,0.00002901143,0.007088419,0.00005099465,0.0006637093],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0007983848,"threshold_uncertainty_score":0.002670825,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008262603405177382,"score_gpt":0.2127975422513098,"score_spread":0.2045349388461325,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}