{"id":"W4406145737","doi":"10.1242/dev.204497","title":"Transcriptional dynamics during karyogamy in rice zygotes","year":2025,"lang":"en","type":"article","venue":"Development","topic":"Plant Reproductive Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"JST-Mirai Program; University of Tokyo; RIKEN; Japan Society for the Promotion of Science; Tokyo Metropolitan University; Institute of Genetics","keywords":"Biology; Zygote; Gamete; Maternal to zygotic transition; Cell biology; Transcriptome; Embryogenesis; Genetics; Gene expression; Regulation of gene expression; Gene; Human fertilization; Embryo","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001047248,0.00008816054,0.00008109017,0.00007368539,0.00003966213,0.000004886928,0.0001045979,0.00008080687,0.000007213355],"category_scores_gemma":[0.0000348537,0.00008919942,0.00002079454,0.00009166417,0.00002755636,0.000001602769,0.00005771867,0.00005731938,0.000008147351],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00007585996,"about_ca_system_score_gemma":0.0001379556,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00000566502,"about_ca_topic_score_gemma":0.0001258608,"domain_scores_codex":[0.9993245,0.0000231512,0.0001482139,0.0002975598,0.0000476875,0.0001589068],"domain_scores_gemma":[0.9998126,0.000004286385,0.00001941312,0.0001178368,0.00002723383,0.00001862054],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00009044779,0.00006414625,0.05667732,0.00002964481,0.00004817588,0.000007087143,0.00005525264,0.00002378061,0.9399122,0.001153629,0.000194479,0.001743834],"study_design_scores_gemma":[0.0003392989,0.00001085877,0.7432768,0.00001459036,0.000002172902,0.00001027369,0.00002491652,0.00001093152,0.2185978,0.00008508471,0.03751008,0.0001171507],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9947156,0.0003786601,0.001152378,0.0002954251,0.0001721174,0.00009544136,0.000007718138,0.000008792765,0.003173853],"genre_scores_gemma":[0.9941117,0.00003926623,0.002713179,0.0001210225,0.00002895417,0.00003111983,0.0002499454,0.000004672605,0.002700152],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7213144,"threshold_uncertainty_score":0.3637447,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00493283426097493,"score_gpt":0.2194065807964599,"score_spread":0.2144737465354849,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}