{"id":"W4406283522","doi":"10.1016/j.onehlt.2025.100970","title":"Subtle genomic differences in Klebsiella pneumoniae sensu stricto isolates indicate host adaptation","year":2025,"lang":"en","type":"article","venue":"One Health","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":7,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Montréal; McGill University Health Centre; Artificial Insemination Center of Quebec; Cegep de Saint Hyacinthe; McGill University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Sensu stricto; Klebsiella pneumoniae; Biology; Adaptation (eye); Host adaptation; Microbiology; Host (biology); Zoology; Genetics; Gene; Escherichia coli; Genome","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002008741,0.0003107358,0.0003008845,0.0006705237,0.0002800312,0.0004542542,0.0001137121,0.0002809694,0.001254562],"category_scores_gemma":[0.0005325343,0.000148611,0.0002261795,0.0008553854,0.0002942451,0.0002109559,0.0003419355,0.00020126,0.0002311205],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001385657,"about_ca_system_score_gemma":0.0002113213,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002200601,"about_ca_topic_score_gemma":0.003314171,"domain_scores_codex":[0.9997376,0.00003358218,0.0000239562,0.00008949306,0.00004844046,0.00006698822],"domain_scores_gemma":[0.9997413,0.00006064823,0.000101963,0.00001819171,0.00003863844,0.00003924803],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0006891302,0.00006053896,0.3787035,0.0003697157,0.0001217686,0.0005549585,0.001417448,0.0002113842,0.6074972,0.0001864895,0.0002004325,0.009987382],"study_design_scores_gemma":[0.000004537698,0.000167243,0.9882953,0.00002927134,0.00004743212,0.0009699764,0.001030166,0.0002142694,0.007611603,0.0001059413,0.001513667,0.00001054479],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9973349,0.0005308329,0.0004105942,0.00003159791,0.000005371252,0.000009526744,0.0008954155,0.000009039253,0.0007727335],"genre_scores_gemma":[0.9970651,0.0003668567,0.0007912506,0.00005980333,0.000005682586,0.00001390183,0.001391865,0.000006891883,0.0002985798],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002200601,"threshold_uncertainty_score":0.004375577,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01895280109405141,"score_gpt":0.2675791354946396,"score_spread":0.2486263344005882,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}