{"id":"W4406347044","doi":"10.20944/preprints202501.0862.v1","title":"From Birds to Bovine: A Review and Critical Analysis of the Outbreaks of Highly Pathogenic Avian Influenza A(H5N1) Clade 2.3.4.4b in the United States","year":2025,"lang":"en","type":"review","venue":"Preprints.org","topic":"Influenza Virus Research Studies","field":"Medicine","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Influenza A virus subtype H5N1; Outbreak; Biology; Clade; Virus; Transmission (telecommunications); Virology; Population; Highly pathogenic; Influenza A virus; Veterinary medicine; Phylogenetic tree; Genetics; Environmental health; Gene; Medicine","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00126109,0.0009563736,0.00169568,0.006206704,0.0004802872,0.001577036,0.001215243,0.001311266,0.00344314],"category_scores_gemma":[0.002492738,0.000444091,0.001245331,0.004435414,0.00081683,0.002378188,0.0007724267,0.001437728,0.0008808664],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008858568,"about_ca_system_score_gemma":0.00221065,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003113337,"about_ca_topic_score_gemma":0.005487401,"domain_scores_codex":[0.9992492,0.0001442675,0.0002569637,0.0001285352,0.0001705811,0.00005046582],"domain_scores_gemma":[0.9978185,0.00127322,0.0003452937,0.00004289893,0.0004128071,0.0001073365],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"design_other","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0002258799,0.0001075118,0.002079161,0.09941521,0.0003590541,0.001016858,0.0006467659,0.0002748878,0.001716979,0.001789469,0.06188877,0.8304795],"study_design_scores_gemma":[0.0000164728,0.0002010681,0.005497562,0.03463881,0.0006803526,0.003925752,0.0004192598,0.0001024842,0.0003197439,0.0007452007,0.9534006,0.00005275329],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"review","genre_gemma":"review","genre_scores_codex":[0.0002202042,0.9987099,0.00006725686,0.0003171415,0.0003363269,0.000005207878,0.0000352536,0.000004631054,0.0003040113],"genre_scores_gemma":[0.0008123247,0.9980319,0.0001662092,0.0003683051,0.0004041967,0.000007003568,0.00007119495,0.000002181825,0.0001367027],"genre_candidate":"review","genre_consensus":"review","teacher_disagreement_score":0.006206704,"threshold_uncertainty_score":0.01151848,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.2080808268605919,"score_gpt":0.4847481728209478,"score_spread":0.2766673459603559,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}