{"id":"W4406357094","doi":"10.7554/elife.97643.2.sa1","title":"Reviewer #1 (Public review): Persistent cross-species transmission systems dominate Shiga toxin-producing Escherichia coli O157:H7 epidemiology in a high incidence region: a genomic epidemiology study","year":2025,"lang":"en","type":"peer-review","venue":"","topic":"Escherichia coli research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"","keywords":"Epidemiology; Transmission (telecommunications); Escherichia coli; Molecular epidemiology; Incidence (geometry); Biology; Shiga toxin; Microbiology; Virology; Genetics; Medicine; Gene; Genotype; Computer science; Physics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0451932,0.001540794,0.004117998,0.004938625,0.003189663,0.007588243,0.005897763,0.0176617,0.06226026],"category_scores_gemma":[0.3205744,0.001637131,0.003608696,0.003589367,0.003295281,0.005464769,0.004154036,0.006964762,0.02263311],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.008031418,"about_ca_system_score_gemma":0.02000744,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006826405,"about_ca_topic_score_gemma":0.00887177,"domain_scores_codex":[0.9681389,0.01164646,0.006164411,0.003065533,0.009438423,0.001546244],"domain_scores_gemma":[0.5825865,0.06292021,0.02666697,0.01068358,0.3049463,0.01219648],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00003928724,0.000004751216,0.0002006936,0.002059463,0.00002900583,0.00003016995,0.00004620065,0.00001540306,0.00002562323,0.00008331493,0.9936655,0.003800583],"study_design_scores_gemma":[0.0005520388,0.00007104371,0.003664219,0.01586525,0.0002537248,0.0004280045,0.0005640187,0.0002587168,0.0002417393,0.001483069,0.9764871,0.0001310866],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"commentary","genre_gemma":"other","genre_scores_codex":[0.0004905598,0.01184387,0.001077927,0.5281591,0.4470735,0.001501378,0.005095927,0.0005037333,0.004253963],"genre_scores_gemma":[0.01082411,0.01887367,0.002422638,0.6256197,0.3085322,0.007307555,0.002642205,0.0009230046,0.0228549],"genre_candidate":"other","genre_consensus":null,"teacher_disagreement_score":0.06226026,"threshold_uncertainty_score":0.2390074,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.09922403083535838,"score_gpt":0.3845453406253261,"score_spread":0.2853213097899677,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}