{"id":"W4406569089","doi":"10.1016/j.ijpara.2025.01.004","title":"Genome assembly variation and its implications for gene discovery in nematodes","year":2025,"lang":"en","type":"article","venue":"International Journal for Parasitology","topic":"Nematode management and characterization studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Genome; Gene; Variation (astronomy); Genetics; Computational biology; Evolutionary biology; Genetic variation","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001368661,0.00006607894,0.0001167142,0.0000533547,0.000154783,0.0001183562,0.0001618262,0.00004042814,0.000006408249],"category_scores_gemma":[0.00006931831,0.00003308653,0.00004861997,0.00008386336,0.00001188563,0.0002013761,0.00004412005,0.00003819113,0.000001062752],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0000269702,"about_ca_system_score_gemma":0.000006615922,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000004983228,"about_ca_topic_score_gemma":0.00005848423,"domain_scores_codex":[0.9994597,0.00001921264,0.0002256688,0.0001333518,0.00004867839,0.0001133507],"domain_scores_gemma":[0.9994835,0.0002034986,0.0001068358,0.00001561111,0.000173436,0.00001711405],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00025977,0.0001496446,0.09622394,0.0000192159,0.0002587096,0.000002449044,0.0001441824,0.00004847044,0.7644684,0.1280266,0.0004147609,0.009983828],"study_design_scores_gemma":[0.0003672407,0.0000422452,0.9772459,0.000009807814,0.00001499599,0.00001799435,0.00004856315,0.0001948219,0.0007268853,0.01458171,0.00668403,0.00006580144],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9747632,0.0001745853,0.00794204,0.01604256,0.0005821866,0.0002685286,0.00008902437,0.0000103859,0.0001275022],"genre_scores_gemma":[0.998347,0.0002141765,0.0001591536,0.0003791569,0.0002085284,0.0001083826,0.00009803101,6.47071e-7,0.0004848759],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.881022,"threshold_uncertainty_score":0.1349229,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02930864287154196,"score_gpt":0.3440963794966105,"score_spread":0.3147877366250685,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}