{"id":"W4406597593","doi":"10.1186/s12866-024-03690-x","title":"Decoding the chicken gastrointestinal microbiome","year":2025,"lang":"en","type":"article","venue":"BMC Microbiology","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":22,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Department for the Economy","keywords":"Biology; Feces; Lactobacillus; Zoology; Ileum; Microbiome; Breed; Firmicutes; Bifidobacterium; 16S ribosomal RNA; Microbiology; Ecology; Bacteria; Genetics","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002919377,0.0002011395,0.0001853712,0.00007863616,0.0002487228,0.00002640057,0.000445956,0.0001485283,0.00005815886],"category_scores_gemma":[0.00008641195,0.0001486853,0.0001298146,0.0001563621,0.0002535632,0.000001808219,0.0002739266,0.0001772357,0.00008939678],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002859263,"about_ca_system_score_gemma":0.0002852888,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002730811,"about_ca_topic_score_gemma":0.0002924252,"domain_scores_codex":[0.998628,0.0001575184,0.0002811563,0.0004387257,0.00001638223,0.0004781992],"domain_scores_gemma":[0.9992805,0.00004543878,0.00008634898,0.0004727171,0.00007004078,0.00004501784],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00006522232,0.00003261629,0.01030684,0.00003006624,0.00002225267,0.000001093918,0.00001417586,0.000005419616,0.9545586,0.0004614605,0.03429316,0.0002091705],"study_design_scores_gemma":[0.001690003,0.0003906527,0.02591624,0.0001259783,0.00005708377,0.001713317,0.0001979978,0.00001979865,0.3547595,0.0001907343,0.614444,0.0004946387],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9847463,0.001612337,0.008763509,0.001255875,0.0005280078,0.0003966539,0.00006815587,0.00003668865,0.002592501],"genre_scores_gemma":[0.9806287,0.00008656556,0.007790219,0.004256422,0.0002778415,0.00002701127,0.000422641,0.00002640398,0.006484204],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.599799,"threshold_uncertainty_score":0.6063209,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009335705174661596,"score_gpt":0.2656054993017492,"score_spread":0.2562697941270876,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}