{"id":"W4406660781","doi":"10.1371/journal.pbio.3002949","title":"Viral and immune dynamics of genital human papillomavirus infections in young women with high temporal resolution","year":2025,"lang":"en","type":"article","venue":"PLoS Biology","topic":"Cervical Cancer and HPV Research","field":"Medicine","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Public Health Agency of Canada; University of Manitoba","funders":"Centre National de la Recherche Scientifique; Ligue Contre le Cancer; Merck Sharp and Dohme; Fondation pour la Recherche Médicale; H2020 European Research Council; Institut de Recherche pour le Développement; Agence Nationale de la Recherche; European Commission; Gilead Sciences; Styrelsen för Internationellt Utvecklingssamarbete","keywords":"Biology; Immune system; Viral load; Immunology; Vaccination; HPV infection; Coinfection; Papillomaviridae; Immunity; Cervical cancer; Virology; Virus; Cancer; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00009858929,0.00006272586,0.0002226408,0.0001823813,0.00004544178,0.000003414697,0.0000361257,0.00008612657,0.0001510354],"category_scores_gemma":[0.00003345967,0.0000485845,0.00001391967,0.000205079,0.0002042112,0.00002247497,0.00005982499,0.000183932,0.000001271456],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001801942,"about_ca_system_score_gemma":0.00006677964,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002852994,"about_ca_topic_score_gemma":0.004877859,"domain_scores_codex":[0.9994143,0.00004451838,0.0001634778,0.0001417429,0.0000524575,0.0001835383],"domain_scores_gemma":[0.9997317,0.00003044235,0.00002530664,0.0001145488,0.00006147752,0.00003657546],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0007109327,0.0002935918,0.960632,0.0001314579,0.0000910587,0.000005390541,0.0001577333,0.000001107897,0.02415571,0.01056652,0.000006760633,0.003247712],"study_design_scores_gemma":[0.00205831,0.001626257,0.9916167,0.00002203959,0.00002169174,0.000008535038,0.0001394356,0.000242809,0.0007853889,0.003383754,0.00004016,0.00005490568],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9918132,0.0002181926,0.00004106147,0.0003011888,0.00002801291,0.0001908952,0.00001753515,0.00001548731,0.007374443],"genre_scores_gemma":[0.9994726,0.00004183859,0.00004894498,0.00002719003,0.00002488794,0.00004372447,0.00006672773,0.000004860738,0.0002692943],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.03098469,"threshold_uncertainty_score":0.4312893,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01342331886605441,"score_gpt":0.3037985305091218,"score_spread":0.2903752116430674,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}