{"id":"W4406665809","doi":"10.1093/molbev/msaf017","title":"Single-cell and Spatial Transcriptomics Illuminate Bat Immunity and Barrier Tissue Evolution","year":2025,"lang":"en","type":"article","venue":"Molecular Biology and Evolution","topic":"Viral Infections and Vectors","field":"Medicine","cited_by":11,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; University of British Columbia","funders":"University of California, San Francisco; Narodowa Agencja Wymiany Akademickiej; Associazione Italiana per la Ricerca sul Cancro; Israel Science Foundation; European Research Council; Narodowym Centrum Nauki; Genome British Columbia; Chan Zuckerberg Initiative","keywords":"Biology; Transcriptome; Gene; Innate immune system; Immunity; Complement system; Vertebrate; Immune system; Genetics; Phenotype; Lineage (genetic); Gene expression; Immunology; Cell biology","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001688618,0.0001054501,0.0001674104,0.0003820363,0.0001512816,0.0004039241,0.0001059622,0.0002931123,0.000597447],"category_scores_gemma":[0.0001614754,0.0001149836,0.000134321,0.000346444,0.0002702755,0.0003319448,0.000241802,0.000276396,0.0001477683],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001644531,"about_ca_system_score_gemma":0.0001285998,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0006067114,"about_ca_topic_score_gemma":0.001528942,"domain_scores_codex":[0.999891,0.00001162836,0.000005377885,0.00004957689,0.00002500366,0.00001728837],"domain_scores_gemma":[0.9999101,0.00002126577,0.00002909188,0.00001168477,0.00001618734,0.00001157798],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004764324,0.000004621188,0.009580554,0.00004547685,0.00001642293,0.00004178797,0.0000920236,0.0002077854,0.9841107,0.0003652883,0.00005286093,0.005434899],"study_design_scores_gemma":[0.000008972131,0.0002376489,0.7412125,0.0000456148,0.0001070671,0.0007813416,0.0010837,0.006626337,0.2346316,0.002484154,0.01274988,0.00003111798],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9870407,0.002465151,0.007751121,0.0001145403,0.00001403394,0.000008573818,0.001053225,0.00004118562,0.001511459],"genre_scores_gemma":[0.9912692,0.001403486,0.004694675,0.0001218996,0.00001986838,0.00001785902,0.0009555491,0.00002179278,0.001495682],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.0006067114,"threshold_uncertainty_score":0.001998663,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006287516994126346,"score_gpt":0.2541886810152382,"score_spread":0.2479011640211119,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}