{"id":"W4406668301","doi":"10.1186/s12915-025-02121-1","title":"Genome sequences of four Ixodes species expands understanding of tick evolution","year":2025,"lang":"en","type":"article","venue":"BMC Biology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Grantová Agentura České Republiky; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Commissariat à l'Énergie Atomique et aux Énergies Alternatives; Agence Nationale de la Recherche","keywords":"Biology; Genome; Ixodes; Tick; Evolutionary biology; Ixodes scapularis; Tick-borne disease; Genetics; Zoology; Ixodidae; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000145305,0.0001160828,0.0003178173,0.0002214779,0.00007829566,0.000002573142,0.0001627146,0.0002258721,0.0003479449],"category_scores_gemma":[0.0001633495,0.0001004278,0.000105503,0.0001839133,0.0007131323,0.00003510956,0.00007436254,0.00008708838,0.0000256623],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001306564,"about_ca_system_score_gemma":0.000182451,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0001460104,"about_ca_topic_score_gemma":0.0001702866,"domain_scores_codex":[0.9990511,0.0002125959,0.0003050505,0.0002022303,0.00001438023,0.0002146657],"domain_scores_gemma":[0.9992662,0.0002978504,0.0001630676,0.0001933811,0.00007007743,0.000009443933],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00007546972,0.00005291617,0.1961632,0.0000569754,0.0001254503,2.880375e-7,0.00005598988,0.00001847849,0.7210068,0.08233266,0.00008126818,0.0000305654],"study_design_scores_gemma":[0.001713062,0.0007657486,0.6847998,0.0001074428,0.000222332,0.0000322225,0.002171078,0.000008398451,0.2625156,0.04497063,0.002393136,0.0003006096],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9694207,0.006360141,0.01954092,0.00005191153,0.0006226887,0.0001411741,0.0000767134,0.00005130533,0.003734442],"genre_scores_gemma":[0.9990646,0.00008812451,0.00009604624,0.00001928979,0.00001914048,0.00000931678,0.00004275717,0.000004952507,0.0006557914],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4886366,"threshold_uncertainty_score":0.4095325,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05068786723099789,"score_gpt":0.2738997380917481,"score_spread":0.2232118708607502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}