{"id":"W4406668301","doi":"10.1186/s12915-025-02121-1","title":"Genome sequences of four Ixodes species expands understanding of tick evolution","year":2025,"lang":"en","type":"article","venue":"BMC Biology","topic":"Vector-borne infectious diseases","field":"Immunology and Microbiology","cited_by":20,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Grantová Agentura České Republiky; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Commissariat à l'Énergie Atomique et aux Énergies Alternatives; Agence Nationale de la Recherche","keywords":"Biology; Genome; Ixodes; Tick; Evolutionary biology; Ixodes scapularis; Tick-borne disease; Genetics; Zoology; Ixodidae; Ecology; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004217483,0.0007573113,0.0004138933,0.002386789,0.0005418354,0.0009074529,0.0003158913,0.0005464773,0.002912552],"category_scores_gemma":[0.0007366037,0.0002418046,0.0006534461,0.002269823,0.000228911,0.0004260228,0.0006690459,0.0007665838,0.001076834],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004757926,"about_ca_system_score_gemma":0.0006590114,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001259417,"about_ca_topic_score_gemma":0.001900189,"domain_scores_codex":[0.9997181,0.00003482525,0.00003320213,0.0001128283,0.00005911857,0.00004186098],"domain_scores_gemma":[0.9995481,0.0001161733,0.0001279252,0.0000501395,0.00009448992,0.0000630478],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002014065,0.0002307691,0.07309051,0.003194042,0.0005269201,0.0008546699,0.001280225,0.003445023,0.8110848,0.001433216,0.004627578,0.09821813],"study_design_scores_gemma":[0.0001629572,0.0007055972,0.6951422,0.000704027,0.001388868,0.003341929,0.00114021,0.005008306,0.07524484,0.002499986,0.2145671,0.00009400528],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9022172,0.008257202,0.008475884,0.0004046648,0.0001000661,0.0001054682,0.07403941,0.0005806476,0.005819618],"genre_scores_gemma":[0.6422978,0.007100698,0.05212103,0.0002971427,0.00009864388,0.0001891886,0.294633,0.0002999889,0.002962505],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002912552,"threshold_uncertainty_score":0.009743452,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05068786723099789,"score_gpt":0.2738997380917481,"score_spread":0.2232118708607502,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}