{"id":"W4406709707","doi":"10.21769/bioprotoc.5216","title":"Generation, Propagation, and Titering of Dicistrovirus From an Infectious Clone","year":2025,"lang":"en","type":"article","venue":"BIO-PROTOCOL","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"clone (Java method); Virology; Biology; Computational biology; Genetics; DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001153056,0.00007546845,0.0001099458,0.00001548746,0.0001643666,0.00005026638,0.0000913355,0.00004249342,0.00007411499],"category_scores_gemma":[0.0000708451,0.00002939201,0.00001732235,0.0001741929,0.00007341031,0.00009951941,0.00008411571,0.00004630461,0.00000436551],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001453246,"about_ca_system_score_gemma":0.00001067717,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001011288,"about_ca_topic_score_gemma":0.001036319,"domain_scores_codex":[0.9993659,0.00005742353,0.0001626418,0.0001828272,0.0001189938,0.0001122057],"domain_scores_gemma":[0.9997305,0.00005436363,0.00005351723,0.00004473882,0.0000800312,0.00003685749],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003696661,0.00004886016,0.01654637,0.00001745065,0.00001106984,8.387735e-7,0.00002054979,7.898831e-7,0.9553207,0.0001177258,0.0008593342,0.02701939],"study_design_scores_gemma":[0.0007396707,0.0006001351,0.4447773,0.0000661319,0.000009050787,0.000001301233,0.00006820801,0.0004255987,0.455535,0.0007193094,0.09685858,0.0001997302],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"protocol","genre_scores_codex":[0.8335761,0.000007062196,0.00002387604,0.000246931,0.00002382151,0.1651982,0.0001604296,0.00004940148,0.0007141037],"genre_scores_gemma":[0.4871819,0.000003775329,0.00010113,0.0001056511,0.0002080666,0.5121924,0.00006149696,6.423238e-7,0.0001449288],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.4997857,"threshold_uncertainty_score":0.1528771,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.05127488123932373,"score_gpt":0.3365964611584544,"score_spread":0.2853215799191307,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}