{"id":"W4406736885","doi":"10.1128/spectrum.02062-24","title":"Surveillance for <i>Chlamydia trachomatis</i> variants escaping detection with the Aptima Combo 2 assay in Canada from 2019 to 2021","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Nova Scotia Health Authority; Dalhousie University; University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Chlamydia trachomatis; Virology; Biology; Statistics; Genetics; Medicine; Mathematics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004673837,0.0004084167,0.0004052509,0.001454451,0.002483062,0.0009998569,0.001082999,0.0003847855,0.0010938],"category_scores_gemma":[0.001273391,0.0002956491,0.0004409014,0.00258217,0.0006482997,0.0002453288,0.000609895,0.0005954275,0.0001277207],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.02902384,"about_ca_system_score_gemma":0.0383601,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.9943211,"about_ca_topic_score_gemma":0.9960598,"domain_scores_codex":[0.9991317,0.00004540049,0.00003935776,0.0001033156,0.0003676814,0.0003125401],"domain_scores_gemma":[0.9980606,0.0000575952,0.0002637601,0.0000241953,0.001128558,0.0004652245],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001802108,0.00006136025,0.9816177,0.0001099449,0.00005593098,0.0004770741,0.0008090591,0.0002687462,0.002101528,0.0001416992,0.001743837,0.01243289],"study_design_scores_gemma":[0.00001269102,0.0001267132,0.9949765,0.00006060432,0.00004193445,0.0003374135,0.001327368,0.0006314857,0.0006778135,0.00002030347,0.001767631,0.00001958066],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9908432,0.000946395,0.0002567579,0.000462556,0.00001687999,0.0001238293,0.003431007,0.00004237772,0.003877062],"genre_scores_gemma":[0.9972716,0.0004480242,0.0005412443,0.0002395204,0.000004257559,0.00001702665,0.0007746456,0.000005890854,0.0006976819],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.02902384,"threshold_uncertainty_score":0.2105836,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004925267933663559,"score_gpt":0.220817423198047,"score_spread":0.2158921552643835,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}