{"id":"W4406736918","doi":"10.1128/jb.00388-24","title":"The GacS/GacA two-component system strongly regulates antimicrobial competition mechanisms of <i>Pseudomonas fluorescens</i> MFE01 strain","year":2025,"lang":"en","type":"article","venue":"Journal of Bacteriology","topic":"Vibrio bacteria research studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":8,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université de Sherbrooke","funders":"","keywords":"Pseudomonas fluorescens; Biology; Mutant; Transposon mutagenesis; Gene; Type VI secretion system; Genetics; Transcriptome; Transposable element; Microbiology; Wild type; Gene expression; Bacteria; Virulence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000785753,0.000193552,0.0004686731,0.0001109994,0.0001816845,0.00003874961,0.0004453764,0.0001477988,0.000006183835],"category_scores_gemma":[0.0001251462,0.0001361386,0.0002280111,0.00009506098,0.0003369711,0.000009163663,0.00027002,0.0002197466,0.000001934334],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00006487098,"about_ca_system_score_gemma":0.0002061372,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000121231,"about_ca_topic_score_gemma":0.00002462392,"domain_scores_codex":[0.9981202,0.0004175844,0.0007503018,0.0002087627,0.000157386,0.0003457242],"domain_scores_gemma":[0.9985526,0.00008622659,0.0005544189,0.0003088948,0.0004321513,0.00006572853],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0008070442,0.00005771986,0.0001878608,0.00008057494,0.0003707381,0.00001380512,0.00001960791,0.00006909539,0.9933674,0.00350065,0.000818285,0.000707195],"study_design_scores_gemma":[0.002171632,0.001045937,0.01273634,0.0002849795,0.00008195013,0.0002382819,0.0004044112,0.00005377919,0.9746739,0.0003535653,0.007779656,0.0001756224],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9946112,0.0006885104,0.002404795,0.00092091,0.0008571451,0.0002051117,0.00007867644,0.000006714719,0.0002269611],"genre_scores_gemma":[0.9978684,0.0006235163,0.001047751,0.00005891138,0.0002597689,0.000005228059,0.00004256275,0.00001450291,0.00007942305],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01869358,"threshold_uncertainty_score":0.5551569,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006710612724582088,"score_gpt":0.2470416893064643,"score_spread":0.2403310765818822,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}