{"id":"W4406795004","doi":"10.1073/pnas.2425178122","title":"Evidence that ARK2N is not a core factor in transcription-coupled DNA repair","year":2025,"lang":"en","type":"letter","venue":"Proceedings of the National Academy of Sciences","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Aard- en Levenswetenschappen, Nederlandse Organisatie voor Wetenschappelijk Onderzoek; European Research Council; Nederlandse Organisatie voor Wetenschappelijk Onderzoek","keywords":"Core (optical fiber); DNA; Transcription factor; DNA repair; Computational biology; Genetics; Biology; Computer science; Gene; Telecommunications","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004123195,0.0005048517,0.0003169955,0.0002618516,0.0003291637,0.0004336515,0.0005432472,0.0005745169,0.003121211],"category_scores_gemma":[0.000386577,0.0001710748,0.0002946008,0.0001625367,0.000389148,0.0003671687,0.000411907,0.0007249909,0.001624644],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003912893,"about_ca_system_score_gemma":0.000247169,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003938704,"about_ca_topic_score_gemma":0.0006187299,"domain_scores_codex":[0.9995871,0.0000308376,0.00004844088,0.0001940481,0.0001027684,0.00003682911],"domain_scores_gemma":[0.9994838,0.00009393784,0.0001285965,0.00008737377,0.00005390997,0.0001523833],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0001542106,0.00002744665,0.0008185807,0.00008983692,0.00001058348,0.0001631551,0.00001159257,0.00003947845,0.9975054,0.0002090453,0.0001501676,0.00082059],"study_design_scores_gemma":[0.00004438701,0.000234566,0.02434268,0.00003171537,0.00004830568,0.003335482,0.00003828129,0.00189502,0.9548915,0.0003279014,0.01479559,0.00001466521],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.962128,0.01341978,0.01539896,0.0006813662,0.0002681567,0.00004572158,0.002340583,0.0003742068,0.005343164],"genre_scores_gemma":[0.9857327,0.001313489,0.004147602,0.0001958358,0.00005400488,0.0000573876,0.002989714,0.00008898941,0.005420239],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.003121211,"threshold_uncertainty_score":0.01044142,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.07138522085816855,"score_gpt":0.3442540818680248,"score_spread":0.2728688610098562,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}