{"id":"W4406851961","doi":"10.1093/gbe/evaf015","title":"Massive Gene Loss in the Fungus <i>Sporothrix epigloea</i> Accompanied a Shift to Life in a Glucuronoxylomannan-based Gel Matrix","year":2025,"lang":"en","type":"article","venue":"Genome Biology and Evolution","topic":"Fungal Biology and Applications","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Athabasca University; University of Alberta","funders":"Natural Sciences and Engineering Research Council of Canada; Alliance de recherche numérique du Canada; Canada's Michael Smith Genome Sciences Centre; Athabasca University; Génome Québec; Ministerio de Ciencia, Tecnología e Innovación","keywords":"Biology; Sporothrix; Sporothrix schenckii; Fungus; Polysaccharide; Microbiology; Axenic; Biochemistry; Botany; Genetics; Bacteria","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.00006078701,0.000379708,0.000262562,0.0002144716,0.0001410857,0.0003360895,0.0001917033,0.0002588382,0.0006128186],"category_scores_gemma":[0.0001358497,0.0001184367,0.0003200221,0.0002548035,0.0001835485,0.000146031,0.0002680414,0.0005299013,0.00037916],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001905007,"about_ca_system_score_gemma":0.0001529638,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001029813,"about_ca_topic_score_gemma":0.001106196,"domain_scores_codex":[0.9998887,0.000007572655,0.00001069619,0.00003457025,0.00003285915,0.00002554736],"domain_scores_gemma":[0.9998592,0.00002531398,0.00005042286,0.0000134529,0.00001498472,0.0000365987],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004314753,0.000006118371,0.0005919199,0.00001628623,0.000004183284,0.0001056139,0.00001252684,0.00002782861,0.998297,0.00002437419,0.00001907548,0.0008518808],"study_design_scores_gemma":[0.00001694195,0.000288436,0.2105571,0.00001727056,0.00007039636,0.002039703,0.0002865254,0.002412079,0.7774428,0.0001395061,0.006703829,0.00002530446],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9950536,0.0003290139,0.001786283,0.00006388201,0.00001651163,0.00001312416,0.001625994,0.0001118082,0.0009998101],"genre_scores_gemma":[0.9935759,0.0002151546,0.001530838,0.00006644368,0.000005840281,0.00001843632,0.00257559,0.0000503902,0.001961462],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001029813,"threshold_uncertainty_score":0.002050102,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.009847187826232078,"score_gpt":0.2907075951251358,"score_spread":0.2808604072989037,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}