{"id":"W4406899074","doi":"10.3389/fmicb.2025.1522711","title":"Geographic variation in abundance and diversity of Acinetobacter baumannii Vieuvirus bacteriophages","year":2025,"lang":"en","type":"article","venue":"Frontiers in Microbiology","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Prophage; Acinetobacter baumannii; Biology; Genome; Genetic diversity; Microbiology; Genetics; Evolutionary biology; Bacteriophage; Gene; Bacteria; Medicine; Population; Escherichia coli","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002943506,0.0001450257,0.0001451493,0.0008749757,0.0001865828,0.0003794801,0.0001525497,0.0002270929,0.000769705],"category_scores_gemma":[0.0006651043,0.00008499013,0.0001566223,0.000715394,0.0002248649,0.0002033663,0.0002616686,0.0001541814,0.0001159432],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001425003,"about_ca_system_score_gemma":0.0001201782,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001929829,"about_ca_topic_score_gemma":0.00264156,"domain_scores_codex":[0.9997062,0.00006845593,0.00002553485,0.00010806,0.00004318108,0.00004854516],"domain_scores_gemma":[0.9993704,0.0001491394,0.000235543,0.00005376734,0.0001260124,0.00006519991],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0001499863,0.00002491114,0.9420001,0.00004804598,0.0001003073,0.0001338376,0.0004868557,0.0002490009,0.04712903,0.00009899093,0.00009105455,0.009487921],"study_design_scores_gemma":[9.95658e-7,0.00003478263,0.9980053,0.000005249628,0.00001163339,0.0001907474,0.0003753018,0.0001495069,0.0009173958,0.00003097073,0.0002746833,0.000003381979],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9992979,0.0001540345,0.0001528043,0.000007287875,0.00000163798,0.000002288796,0.0001462466,0.000003055122,0.0002348279],"genre_scores_gemma":[0.9995459,0.00006884435,0.0001610523,0.000003832885,0.000001977844,0.000002421064,0.0001406707,0.000001110185,0.00007409915],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001929829,"threshold_uncertainty_score":0.003837168,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003688783006585074,"score_gpt":0.2026239174793708,"score_spread":0.1989351344727858,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}