{"id":"W4406928098","doi":"10.32614/rj-2024-009","title":"shinymgr: A Framework for Building, Managing, and Stitching Shiny Modules into Reproducible Workflows","year":2025,"lang":"en","type":"article","venue":"The R Journal","topic":"3D Shape Modeling and Analysis","field":"Engineering","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"U.S. Geological Survey; Colorado State University","keywords":"Image stitching; Workflow; Computer science; Software engineering; Systems engineering; Engineering; Database; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001126071,0.0001329053,0.000180953,0.0001502459,0.0004492775,0.0002089581,0.0002634329,0.00006148391,0.0000114316],"category_scores_gemma":[0.0001736174,0.00009632083,0.00008727039,0.0002115319,0.00002586103,0.0001105579,0.00005355521,0.0004997078,0.000002100689],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004442231,"about_ca_system_score_gemma":0.00001306704,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00002655487,"about_ca_topic_score_gemma":0.00001443451,"domain_scores_codex":[0.9992215,0.00003521475,0.0002360794,0.0001597069,0.0001115771,0.0002359223],"domain_scores_gemma":[0.999388,0.0001625709,0.00004165644,0.0003127494,0.00003716027,0.00005790967],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"simulation_or_modeling","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.00003113853,0.0000150989,0.0005581888,0.0001193917,0.0004305035,0.000003922663,0.00252725,0.8121399,0.0008187581,0.008740384,0.004234966,0.1703805],"study_design_scores_gemma":[0.0001549724,0.0000111551,0.0001256647,0.0003765777,0.000160669,0.00001641061,0.0002637508,0.6709378,0.0003386669,0.3254535,0.00202464,0.0001361704],"study_design_candidate":"simulation_or_modeling","study_design_consensus":"simulation_or_modeling","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.2000107,0.00662948,0.7908993,0.001701164,0.0003054477,0.00006312495,6.986131e-7,0.0000992229,0.0002909033],"genre_scores_gemma":[0.9250934,0.001134238,0.0729554,0.0001568367,0.0003573824,0.000006255559,5.228572e-7,0.00002374973,0.0002722035],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.7250828,"threshold_uncertainty_score":0.392785,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.00985385308360435,"score_gpt":0.2674629672702882,"score_spread":0.2576091141866839,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}