{"id":"W4407010665","doi":"10.1016/j.xpro.2025.103616","title":"Protocol for in vivo chromatin immunoprecipitation on purified chromatin isolated from mouse liver nuclei","year":2025,"lang":"en","type":"article","venue":"STAR Protocols","topic":"Genomics and Chromatin Dynamics","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"Institute of Nutrition, Metabolism and Diabetes; Canadian Institutes of Health Research; Saskatchewan Health Research Foundation","keywords":"Chromatin immunoprecipitation; Immunoprecipitation; Chromatin; Cell biology; In vivo; Chemistry; Molecular biology; Protocol (science); Biology; Medicine; Genetics; Biochemistry; DNA; Pathology; Gene; Gene expression","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001765733,0.002100575,0.001371791,0.002719237,0.002533012,0.0009375098,0.002225278,0.001163923,0.07378476],"category_scores_gemma":[0.001352906,0.001948309,0.001701558,0.001750363,0.0007954472,0.000832597,0.001301057,0.005367034,0.05428134],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009510139,"about_ca_system_score_gemma":0.00163323,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001494677,"about_ca_topic_score_gemma":0.005418105,"domain_scores_codex":[0.9980459,0.0003470927,0.0002476867,0.0004762809,0.0006868191,0.0001961936],"domain_scores_gemma":[0.9988134,0.0002372825,0.00006160438,0.0004016934,0.0003531415,0.0001329821],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.0009043016,0.0005899611,0.000692638,0.00175243,0.0001340236,0.0005096685,0.0002531623,0.0007758095,0.8710127,0.004150687,0.0818048,0.03741973],"study_design_scores_gemma":[0.0004051003,0.0007897383,0.006222023,0.0003343516,0.0001653827,0.001296029,0.00006645016,0.001534942,0.2733541,0.002801758,0.7128261,0.0002040267],"study_design_candidate":"not_applicable","study_design_consensus":null,"genre_codex":"methods","genre_gemma":"protocol","genre_scores_codex":[0.02534837,0.008317663,0.7567681,0.001995442,0.003473696,0.03092719,0.1098153,0.01397863,0.04937547],"genre_scores_gemma":[0.02880305,0.006910813,0.5301569,0.002510467,0.0004424618,0.07270347,0.2604284,0.003251716,0.0947928],"genre_candidate":"protocol","genre_consensus":null,"teacher_disagreement_score":0.07378476,"threshold_uncertainty_score":0.2468346,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01492255473803275,"score_gpt":0.3012440127307944,"score_spread":0.2863214579927617,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}