{"id":"W4407061543","doi":"10.1101/2025.01.30.635805","title":"An HIV-1 Reference Epitranscriptome","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"RNA modifications and cancer","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McGill University","funders":"","keywords":"Human immunodeficiency virus (HIV); Computer science; Medicine; Virology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003070936,0.0003920091,0.0003516055,0.0003810492,0.000373814,0.0004208706,0.0003954994,0.000389659,0.001877414],"category_scores_gemma":[0.0007805218,0.0001979179,0.0004474352,0.0005795714,0.000260742,0.0003489058,0.000383661,0.0005999545,0.0006590695],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004949369,"about_ca_system_score_gemma":0.0005457245,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001838457,"about_ca_topic_score_gemma":0.002888822,"domain_scores_codex":[0.999532,0.00004157321,0.00002959111,0.0001908267,0.0001587907,0.00004725238],"domain_scores_gemma":[0.9993818,0.0001213441,0.00008838911,0.0001157177,0.0002498257,0.00004292412],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003374698,0.00002709363,0.001440726,0.0001100502,0.00001984696,0.0001225357,0.00006025005,0.000826761,0.9881126,0.0004272643,0.0003142653,0.008201051],"study_design_scores_gemma":[0.00002877296,0.0003817868,0.01007286,0.00001766525,0.00008047582,0.0005205887,0.00005740125,0.00849437,0.9664471,0.0004353138,0.01343254,0.0000311263],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8791106,0.001506275,0.08966158,0.0002355567,0.0001236104,0.0003442021,0.02320649,0.0009665403,0.004845177],"genre_scores_gemma":[0.6901438,0.001306825,0.2245574,0.0005004914,0.00006985939,0.0006661654,0.07435657,0.0004354207,0.007963451],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001877414,"threshold_uncertainty_score":0.006280601,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01546205397681684,"score_gpt":0.250008091069946,"score_spread":0.2345460370931292,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}