{"id":"W4407073344","doi":"10.1101/2025.01.29.635489","title":"MassVis <i>ion</i> : An open-source end-to-end platform for AI-driven mass spectrometry image analysis","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Metabolomics and Mass Spectrometry Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Queen's University","funders":"","keywords":"Mass spectrometry; Mass spectrometry imaging; Open source; Computer science; Chemistry; Chromatography; Operating system; Software","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002143348,0.002471162,0.001024862,0.002082822,0.0007269231,0.003830005,0.004090969,0.001668536,0.02438122],"category_scores_gemma":[0.004434089,0.001326154,0.001788282,0.001045686,0.001094338,0.002318739,0.004950884,0.002778019,0.02497606],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0008986424,"about_ca_system_score_gemma":0.001451474,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00276461,"about_ca_topic_score_gemma":0.002973583,"domain_scores_codex":[0.9986493,0.0001017263,0.0001086679,0.0004005787,0.0006161914,0.0001235752],"domain_scores_gemma":[0.9981648,0.0004396037,0.0001844904,0.0004997455,0.0004783903,0.0002331132],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"not_applicable","study_design_scores_codex":[0.003243135,0.0004506035,0.00639017,0.0023229,0.0008848187,0.002126876,0.001368625,0.01477484,0.2144655,0.02336871,0.4839827,0.2466212],"study_design_scores_gemma":[0.0006756723,0.000357079,0.008778889,0.0004400116,0.0001716741,0.001405988,0.0002935392,0.3078981,0.2449857,0.04248938,0.3916602,0.0008437728],"study_design_candidate":"not_applicable","study_design_consensus":"not_applicable","genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.00498112,0.0003949367,0.329065,0.0003705242,0.0001685171,0.0003497388,0.01228642,0.6456323,0.006751487],"genre_scores_gemma":[0.09487522,0.0008759662,0.6433817,0.002078992,0.0002456438,0.002143743,0.08252443,0.1548595,0.01901481],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.02438122,"threshold_uncertainty_score":0.08156329,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01242661707083055,"score_gpt":0.2571698980241324,"score_spread":0.2447432809533018,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}