{"id":"W4407106523","doi":"10.3390/genes16020183","title":"Molecular Markers Specific for the Pseudomonadaceae Genera Provide Novel and Reliable Means for the Identification of Other Pseudomonas Strains/spp. Related to These Genera","year":2025,"lang":"en","type":"article","venue":"Genes","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"Natural Sciences and Engineering Research Council of Canada","keywords":"Biology; Phylogenetic tree; Clade; Taxon; Taxonomic rank; Phylogenetics; Zoology; Pseudomonas; Evolutionary biology; Genetics; Ecology; Bacteria; Gene","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004013999,0.000871359,0.0004936348,0.001828665,0.0003894783,0.0006547649,0.0002789584,0.0005183122,0.001782661],"category_scores_gemma":[0.0009847803,0.0002828939,0.00044644,0.001741012,0.0002529158,0.0006020189,0.0004858731,0.0005504353,0.001408526],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001927642,"about_ca_system_score_gemma":0.0003740027,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0005758308,"about_ca_topic_score_gemma":0.001504542,"domain_scores_codex":[0.9995875,0.00005108592,0.00003558361,0.0001145108,0.0001633328,0.0000479803],"domain_scores_gemma":[0.9986381,0.0002400209,0.000644969,0.0001342576,0.0002298704,0.0001127696],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0003945518,0.0001422937,0.1165103,0.0005959162,0.00008704544,0.0003814918,0.0001955754,0.0006297204,0.8163575,0.0003156492,0.0006653092,0.06372471],"study_design_scores_gemma":[0.00005605496,0.0007893445,0.5598717,0.0001912425,0.0002667195,0.003738462,0.0008832061,0.007898905,0.3895272,0.001500712,0.03520611,0.00007030203],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9578586,0.003020082,0.02637993,0.0002330451,0.00006071321,0.0001266688,0.007592815,0.001099273,0.003628766],"genre_scores_gemma":[0.9347191,0.001234415,0.05055718,0.00009284094,0.00004612303,0.0001405092,0.01171082,0.0001011626,0.001397898],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001828665,"threshold_uncertainty_score":0.005963564,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01330742071538486,"score_gpt":0.2489569567403479,"score_spread":0.2356495360249631,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}