{"id":"W4407137809","doi":"10.1128/jcm.01456-24","title":"Development and evaluation of a next-generation sequencing methodology for measles virus using Oxford Nanopore Technology","year":2025,"lang":"en","type":"article","venue":"Journal of Clinical Microbiology","topic":"Virology and Viral Diseases","field":"Medicine","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"","keywords":"Reference genome; Amplicon; Measles virus; Genome; Whole genome sequencing; Biology; Nanopore sequencing; Genetics; Computational biology; Measles; Virology; Gene; Polymerase chain reaction","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002868627,0.0006859825,0.0005751553,0.0006915053,0.0004455851,0.0007088258,0.0008386948,0.0008428259,0.001069666],"category_scores_gemma":[0.002289509,0.0004646493,0.0004593753,0.0003042354,0.0004147868,0.0007299237,0.0009224539,0.0006857328,0.0006537654],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005675851,"about_ca_system_score_gemma":0.0007910926,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001616771,"about_ca_topic_score_gemma":0.002260766,"domain_scores_codex":[0.9979918,0.0004478775,0.000202777,0.0003881257,0.0008384683,0.0001309331],"domain_scores_gemma":[0.9986898,0.0004492576,0.0001419748,0.0001655512,0.0004113884,0.0001418921],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00009995675,0.00004756613,0.00229054,0.000187247,0.00003633513,0.00005971896,0.0001196545,0.001701678,0.9765562,0.0003572717,0.000128693,0.01841517],"study_design_scores_gemma":[0.00003071427,0.001073419,0.01016258,0.00004246132,0.00005954788,0.000493388,0.0000876576,0.02562325,0.9534348,0.000267653,0.008640863,0.00008372136],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.3468649,0.001715097,0.6439203,0.0002259,0.0001063484,0.001700608,0.001640963,0.001760773,0.002065106],"genre_scores_gemma":[0.1255104,0.0005161946,0.8700615,0.0001007154,0.00001729669,0.0006880895,0.001668212,0.0001173176,0.001320365],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.002868627,"threshold_uncertainty_score":0.01517093,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.5726134469004739,"score_gpt":0.5170409470205909,"score_spread":0.055572499879883,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}