{"id":"W4407179704","doi":"10.21203/rs.3.rs-5928429/v1","title":"Swine Influenza A virus infection sets the local immunological landscape in subsequent infection with Porcine Reproductive and Respiratory Syndrome virus","year":2025,"lang":"en","type":"preprint","venue":"Research Square","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Université de Montréal","funders":"Erasmus+; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement; Agence Nationale de Sécurité Sanitaire de l’Alimentation, de l’Environnement et du Travail; Pirbright Institute","keywords":"Porcine reproductive and respiratory syndrome virus; Virus; Virology; Respiratory system; Influenza A virus; Biology; Immunology; Medicine; Internal medicine","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003765013,0.0001665722,0.0002406993,0.000213775,0.0003179422,0.0006565571,0.0001250661,0.0003804229,0.002764285],"category_scores_gemma":[0.001015924,0.0001797945,0.0002396515,0.0001569771,0.0002644725,0.0003645059,0.0003934996,0.0004675675,0.0006084159],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001848163,"about_ca_system_score_gemma":0.000174031,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0004986723,"about_ca_topic_score_gemma":0.0007890077,"domain_scores_codex":[0.9997116,0.00009363204,0.000009321965,0.00005581015,0.00002150553,0.0001081651],"domain_scores_gemma":[0.9995945,0.0001146043,0.00009128061,0.00003552212,0.00003032642,0.0001338345],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.002066239,0.0004311404,0.5682434,0.00008648825,0.000115641,0.0007791569,0.0005902569,0.001508183,0.4096087,0.001119088,0.0009880395,0.01446368],"study_design_scores_gemma":[0.00001438323,0.0003350313,0.9916561,0.00001100818,0.00002655729,0.0003434556,0.000619224,0.001461177,0.004346945,0.0007146837,0.0004614627,0.00001000417],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9985344,0.00007651939,0.0001555331,0.00003236879,0.00001078235,0.000004880612,0.00005129241,0.000004219068,0.001129846],"genre_scores_gemma":[0.9993263,0.00004177942,0.0001135282,0.00003144315,0.00001236691,0.000006029196,0.0001069859,0.000005252639,0.000356355],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002764285,"threshold_uncertainty_score":0.009247482,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0854647249147286,"score_gpt":0.358869565551959,"score_spread":0.2734048406372304,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}