{"id":"W4407224399","doi":"10.22541/au.173884756.63705171/v1","title":"Genome architecture and speciation in plants and animals","year":2025,"lang":"en","type":"preprint","venue":"","topic":"Plant Reproductive Biology","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"","keywords":"Genetic algorithm; Genome; Architecture; Biology; Evolutionary biology; Computational biology; Genetics; Geography; Gene; Archaeology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001400264,0.0001573643,0.0001925486,0.00008792407,0.00001528699,0.00001352352,0.00008813509,0.0003459519,0.000005747773],"category_scores_gemma":[0.00006456988,0.0001417052,0.00001903917,0.00001949692,0.00005175825,4.505787e-7,0.0006155623,0.0001809476,6.57745e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001086781,"about_ca_system_score_gemma":0.00005239657,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00004417196,"about_ca_topic_score_gemma":0.0003065363,"domain_scores_codex":[0.9989886,0.00005952967,0.0001399467,0.0006427717,0.00003471691,0.0001344049],"domain_scores_gemma":[0.9996558,0.00001152591,0.00005614499,0.0002290259,0.00001802312,0.00002944162],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001677982,0.0000206734,0.02944465,0.0001073815,0.00006654967,0.00000730542,0.00009400929,0.00006142866,0.9663157,0.00009133374,0.0001325392,0.00349059],"study_design_scores_gemma":[0.0005633539,0.0001630264,0.8887737,0.00006330692,0.00001496155,0.00008857678,0.00005273008,0.00002074784,0.0649971,0.002959061,0.04180958,0.0004938662],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9915288,0.004261769,0.0002035387,0.0002180699,0.0000938611,0.0002637437,0.000211185,0.000007078217,0.003211945],"genre_scores_gemma":[0.9944198,0.002451268,0.001049382,0.0001129776,0.0002601511,0.00001849918,0.0005633052,0.000006364713,0.001118318],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.9013186,"threshold_uncertainty_score":0.5778571,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.008759847326845285,"score_gpt":0.24207047604117,"score_spread":0.2333106287143247,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}