{"id":"W4407284947","doi":"10.1093/jcag/gwae059.056","title":"A56 THE ROLE OF THE STERILE ALPHA MOTIF (SAM) POINTED DOMAIN ETS FAMILY TRANSCRIPTION FACTOR (SPDEF) ON GOBLET CELL BIOLOGY AND INTESTINAL MUCUS PRODUCTION IN THE CONTEXT OF PARASITIC HOST DEFENSE.","year":2025,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Parasites and Host Interactions","field":"Immunology and Microbiology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"McMaster University","funders":"","keywords":"Biology; Mucus; Transcription factor; Context (archaeology); Cell biology; Goblet cell; Microbiology; Genetics; Gene; Epithelium; Ecology","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000763051,0.000126457,0.0003423592,0.000221493,0.0001664313,0.000009308921,0.000391586,0.0001615023,0.00002401401],"category_scores_gemma":[0.0003514514,0.00006901718,0.000187092,0.0001636676,0.0002720703,0.00005252437,0.00002084235,0.0005728389,0.00000168407],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000287654,"about_ca_system_score_gemma":0.0001829054,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.005299632,"about_ca_topic_score_gemma":0.1099347,"domain_scores_codex":[0.9975747,0.001359677,0.0006207752,0.0001211381,0.00006710196,0.0002565651],"domain_scores_gemma":[0.9981397,0.0003375428,0.001030551,0.0002121988,0.0002592351,0.00002079794],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0006366607,0.0001512873,0.5685706,0.00001282218,0.0002393122,6.448839e-7,0.001850186,0.0000385563,0.4264128,0.000425179,0.001341751,0.0003201916],"study_design_scores_gemma":[0.001361135,0.0009156754,0.9748176,0.0001236041,0.0001224948,0.00008641576,0.002737041,0.000008431905,0.01628629,0.0005060104,0.002990917,0.00004437752],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.98588,0.0002170268,0.00001385933,0.01217795,0.001057136,0.0002794323,0.0001540473,0.00000167206,0.0002188444],"genre_scores_gemma":[0.9986125,0.00003304766,0.00001137297,0.001124213,0.00002526376,0.000005401904,0.000006481958,0.000005408544,0.000176375],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4101265,"threshold_uncertainty_score":0.9063066,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007591348887405639,"score_gpt":0.235368772194532,"score_spread":0.2277774233071264,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}