{"id":"W4407285687","doi":"10.1093/jcag/gwae059.164","title":"A164 SINGLE-CELL RNASEQ INDICATES INCREASE IN COLONIC REGULATORY MACROPHAGES DURING <i>CITROBACTER RODENTIUM</i> INFECTIOUS COLITIS","year":2025,"lang":"en","type":"article","venue":"Journal of the Canadian Association of Gastroenterology","topic":"Microscopic Colitis","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Calgary","funders":"","keywords":"Citrobacter rodentium; Citrobacter; Colitis; Microbiology; Biology; Immunology; Enterobacteriaceae; Gene; Escherichia coli; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000633381,0.0001210198,0.0004680475,0.0006577461,0.00008407205,0.00002175087,0.0002031156,0.0001728279,0.00009297641],"category_scores_gemma":[0.0004806377,0.000113109,0.0001809886,0.000242871,0.00007932564,0.00006918324,0.00005501651,0.0004735476,0.000002924944],"about_ca_system_candidate":true,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.004276362,"about_ca_system_score_gemma":0.0008992238,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.01052995,"about_ca_topic_score_gemma":0.5309172,"domain_scores_codex":[0.9981986,0.0003596112,0.0006836731,0.0001249187,0.0002255969,0.0004075901],"domain_scores_gemma":[0.9983193,0.00007146708,0.0009491609,0.0001844382,0.0002806702,0.0001949688],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.0003289386,0.0001170099,0.9816469,0.00007945979,0.000139384,0.00007480688,0.0001085516,0.00002059548,0.01363779,0.00001102194,0.003809965,0.00002560589],"study_design_scores_gemma":[0.004403078,0.0003340348,0.9896325,0.0002290802,0.0001333158,0.0001902732,0.00002460192,0.000003265049,0.004311688,0.00006876777,0.0006293762,0.00004003572],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.992186,0.00006279728,0.000002384078,0.006456924,0.0005728138,0.0002196243,0.00003190963,0.000004772161,0.0004627986],"genre_scores_gemma":[0.9961195,0.00002627684,0.00004285487,0.001863219,0.00008374941,0.000003983949,0.00000323832,0.0000119737,0.001845226],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5203873,"threshold_uncertainty_score":0.9995461,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.003244121092191425,"score_gpt":0.2044302180669871,"score_spread":0.2011860969747956,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}