{"id":"W4407309548","doi":"10.1073/pnas.2413675122","title":"Giant RNA genomes: Roles of host, translation elongation, genome architecture, and proteome in nidoviruses","year":2025,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Innovation Cluster (Canada)","funders":"Helmholtz Association; Universität Regensburg; Medizinischen Hochschule Hannover; European Research Council; Universiteit Leiden; Leids Universitair Medisch Centrum; Lomonosov Moscow State University; Université de Strasbourg; Deutsche Forschungsgemeinschaft; Deutsches Krebsforschungszentrum","keywords":"Biology; Genome; Genetics; RNA; Genomic organization; RNA virus; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006691093,0.00007619038,0.0001470339,0.00009863806,0.0001856516,0.00001359459,0.0003007326,0.00005529138,0.000007371748],"category_scores_gemma":[0.0001877607,0.00002977734,0.00004451989,0.001135322,0.0006653825,0.0001905277,0.00007934753,0.00009449774,1.823389e-7],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001705491,"about_ca_system_score_gemma":0.00001022248,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000357214,"about_ca_topic_score_gemma":0.0000123623,"domain_scores_codex":[0.9990239,0.000009565299,0.0003084921,0.0001788605,0.0003775526,0.0001016168],"domain_scores_gemma":[0.9994367,0.0001583845,0.0002364122,0.000002871625,0.000153245,0.00001234062],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00001641804,0.00003192491,0.02717921,0.00003892204,0.000009177917,1.243692e-9,0.0002273766,0.00003911881,0.9593806,0.007256323,0.000007599756,0.005813384],"study_design_scores_gemma":[0.00007467617,0.00006596714,0.8145112,0.00007374329,0.000006530683,8.434094e-7,0.0003316653,0.00007079166,0.1549571,0.02957673,0.0002770674,0.00005357817],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929954,0.0009242899,0.000001241334,0.002760584,0.000005996572,0.0002710891,0.00002260855,0.000007375225,0.00301138],"genre_scores_gemma":[0.999096,0.0001748188,0.0005714969,0.00008629959,0.00002488169,0.00001612135,1.448477e-7,3.293636e-7,0.00002986266],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.8044234,"threshold_uncertainty_score":0.2451629,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04172353389117836,"score_gpt":0.276991885861098,"score_spread":0.2352683519699197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}