{"id":"W4407309548","doi":"10.1073/pnas.2413675122","title":"Giant RNA genomes: Roles of host, translation elongation, genome architecture, and proteome in nidoviruses","year":2025,"lang":"en","type":"article","venue":"Proceedings of the National Academy of Sciences","topic":"Animal Virus Infections Studies","field":"Agricultural and Biological Sciences","cited_by":16,"is_retracted":false,"has_abstract":true,"ca_institutions":"Innovation Cluster (Canada)","funders":"Helmholtz Association; Universität Regensburg; Medizinischen Hochschule Hannover; European Research Council; Universiteit Leiden; Leids Universitair Medisch Centrum; Lomonosov Moscow State University; Université de Strasbourg; Deutsche Forschungsgemeinschaft; Deutsches Krebsforschungszentrum","keywords":"Biology; Genome; Genetics; RNA; Genomic organization; RNA virus; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001524706,0.0002775794,0.0004027211,0.0005074704,0.0003545818,0.0005328128,0.0001797635,0.0002486287,0.0004342418],"category_scores_gemma":[0.0003747197,0.0001995742,0.0004121199,0.0004107156,0.0002510958,0.0004603065,0.0003526297,0.0002925115,0.0002650372],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003641264,"about_ca_system_score_gemma":0.0002651924,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001115941,"about_ca_topic_score_gemma":0.002051164,"domain_scores_codex":[0.9998772,0.00001130768,0.00001300322,0.00006091671,0.00001967801,0.00001787123],"domain_scores_gemma":[0.9998224,0.00003963834,0.00005407764,0.00003008597,0.00001621679,0.00003756155],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004941048,0.0000189426,0.0356211,0.0002023336,0.00002490131,0.0001127478,0.0001495672,0.0007812168,0.950964,0.0005424012,0.00007667195,0.01101187],"study_design_scores_gemma":[0.00003572088,0.0004226959,0.6684802,0.00009555757,0.0001803539,0.002138685,0.0007697197,0.01564438,0.2962379,0.00370066,0.01220824,0.00008584862],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9929721,0.001365517,0.003758724,0.00003958586,0.000005662509,0.00001281439,0.001099868,0.0000710398,0.0006746249],"genre_scores_gemma":[0.9768375,0.0007254246,0.01676995,0.0000359383,0.000007090087,0.00003059492,0.00493708,0.00006139064,0.0005950271],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001115941,"threshold_uncertainty_score":0.002641916,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04172353389117836,"score_gpt":0.276991885861098,"score_spread":0.2352683519699197,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}