{"id":"W4407316726","doi":"10.1177/10406387251316314","title":"Whole-genome sequencing of <i>Salmonella</i> serovars isolated from diarrheic and non-diarrheic foals","year":2025,"lang":"en","type":"article","venue":"Journal of Veterinary Diagnostic Investigation","topic":"Antibiotic Resistance in Bacteria","field":"Biochemistry, Genetics and Molecular Biology","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Guelph","funders":"Coordenação de Aperfeiçoamento de Pessoal de Nível Superior; Fundação de Amparo à Pesquisa do Estado de São Paulo","keywords":"Microbiology; Salmonella enterica; Salmonella; Biology; Multiple drug resistance; Serotype; Diarrhea; Virulence; Antibiotic resistance; Genomic island; Virology; Drug resistance; Gene; Antibiotics; Medicine; Bacteria; Genetics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.000338609,0.0001841838,0.0003341958,0.0001253992,0.00006191002,0.00003570589,0.0002036551,0.0001798449,0.000007025288],"category_scores_gemma":[0.0008437887,0.0001797474,0.00008935609,0.0001636263,0.000211722,0.00002851424,0.00009970703,0.0001472586,0.000002076533],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00004837338,"about_ca_system_score_gemma":0.0002436115,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0000342231,"about_ca_topic_score_gemma":0.000003807709,"domain_scores_codex":[0.9986214,0.0001302579,0.0006945487,0.0002288157,0.0001484534,0.0001765446],"domain_scores_gemma":[0.9985879,0.0002608754,0.0005816509,0.0002470669,0.0002194082,0.0001030651],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001521585,0.0000238235,0.0301624,0.00009568458,0.0001177702,0.00004395834,0.0001352652,0.0001494377,0.9685987,0.0000112461,0.0002608366,0.000248747],"study_design_scores_gemma":[0.002070449,0.002812128,0.5022151,0.001901843,0.0003196285,0.0002552595,0.0004355626,0.0004198542,0.4845898,0.002946765,0.001527241,0.0005062677],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9945676,0.001694249,0.002845179,0.0002342899,0.0003666008,0.0001638171,0.00004721064,0.000004511946,0.00007657299],"genre_scores_gemma":[0.9956115,0.0007570975,0.003076263,0.0002312752,0.0001604339,0.000002558417,0.00008572739,0.0000190029,0.00005616858],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.4840088,"threshold_uncertainty_score":0.7329885,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01314711426800742,"score_gpt":0.250551957936185,"score_spread":0.2374048436681775,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}