{"id":"W4407371892","doi":"10.1371/journal.ppat.1012894","title":"Order among chaos: High throughput MYCroplanters can distinguish interacting drivers of host infection in a highly stochastic system","year":2025,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canada Excellence Research Chairs, Government of Canada; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Host (biology); Pathogen; Biology; Microbiome; Abiotic component; Disease; Genotype; Computational biology; Genetics; Ecology; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0006374327,0.0003367878,0.0007137556,0.0003586627,0.0002619592,0.0006122052,0.0004572096,0.0003505355,0.001071843],"category_scores_gemma":[0.001249513,0.0003746642,0.0004688616,0.0002920197,0.0005143199,0.0006598951,0.0006249755,0.0008970427,0.0002309498],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0007346201,"about_ca_system_score_gemma":0.0003677252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001275033,"about_ca_topic_score_gemma":0.002321963,"domain_scores_codex":[0.9996406,0.00008017902,0.00001972039,0.0001144684,0.00009872906,0.00004644558],"domain_scores_gemma":[0.9987344,0.0007562836,0.0001860712,0.0001709114,0.00006187435,0.00009043979],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000751005,0.0002259173,0.02215337,0.0003663776,0.0002025275,0.0002616925,0.0001714726,0.06551149,0.8813634,0.005103039,0.001119449,0.02277025],"study_design_scores_gemma":[0.0000675329,0.0007507378,0.04510643,0.00002551079,0.0001000018,0.0003053292,0.000121388,0.6722519,0.2673631,0.009857864,0.003911283,0.0001388157],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9010916,0.0004042191,0.09361185,0.0002685635,0.00003688509,0.0000704504,0.001638021,0.001394448,0.001484003],"genre_scores_gemma":[0.9668908,0.0001832409,0.03111333,0.0000862273,0.00001413399,0.0001227107,0.0009052734,0.00009389244,0.0005903287],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001275033,"threshold_uncertainty_score":0.005330145,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01141545866356493,"score_gpt":0.2082325767765139,"score_spread":0.196817118112949,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}