{"id":"W4407371892","doi":"10.1371/journal.ppat.1012894","title":"Order among chaos: High throughput MYCroplanters can distinguish interacting drivers of host infection in a highly stochastic system","year":2025,"lang":"en","type":"article","venue":"PLoS Pathogens","topic":"Plant-Microbe Interactions and Immunity","field":"Agricultural and Biological Sciences","cited_by":5,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of British Columbia","funders":"Canada Excellence Research Chairs, Government of Canada; Natural Sciences and Engineering Research Council of Canada; Canada Research Chairs","keywords":"Host (biology); Pathogen; Biology; Microbiome; Abiotic component; Disease; Genotype; Computational biology; Genetics; Ecology; Gene; Medicine","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001051058,0.0001494418,0.0002522507,0.00006331593,0.0001733099,0.00004566411,0.0001467785,0.00008249204,0.00004614195],"category_scores_gemma":[0.0002424926,0.00007480655,0.00007010871,0.0005376451,0.00005343876,0.0001167496,0.00009220061,0.0002274462,0.000007950492],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001404315,"about_ca_system_score_gemma":0.0000102371,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01149171,"about_ca_topic_score_gemma":0.01060565,"domain_scores_codex":[0.998994,0.0001048877,0.0003293905,0.0002390354,0.0001000067,0.0002326915],"domain_scores_gemma":[0.9992644,0.0003119814,0.0001852851,0.00007708563,0.0001247357,0.00003656246],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.00004675096,0.000324676,0.2000381,0.0001155849,0.00009014017,0.00002816092,0.0007621322,0.000164921,0.7960116,0.00013879,0.0001096529,0.002169515],"study_design_scores_gemma":[0.0003859078,0.000212046,0.9765008,0.002533269,0.00008961488,0.00002721035,0.004043276,0.004433812,0.01110093,0.00001271562,0.0002953225,0.0003651007],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9980747,0.00001645517,0.00004074655,0.0001009666,0.0005238267,0.0002106256,0.0002529321,0.00006644252,0.0007133165],"genre_scores_gemma":[0.9996611,0.00001693241,0.0000342862,0.00002680723,0.00005349074,0.00001878991,0.00007696386,0.000001432171,0.0001101758],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.7849106,"threshold_uncertainty_score":0.9950908,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01141545866356493,"score_gpt":0.2082325767765139,"score_spread":0.196817118112949,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}