{"id":"W4407398898","doi":"10.1186/s12906-025-04783-4","title":"Rapid shift of gut microbiome and enrichment of beneficial microbes during arhatic yoga meditation retreat in a single-arm pilot study","year":2025,"lang":"en","type":"article","venue":"BMC Complementary Medicine and Therapies","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":9,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Waterloo","funders":"","keywords":"Meditation; Microbiome; Gut microbiome; Psychology; Biology; Bioinformatics; Geography","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002493306,0.0001381895,0.0002923011,0.0002029375,0.00005688624,0.00000400224,0.00007577045,0.00002602531,0.00005646078],"category_scores_gemma":[0.00001311494,0.0001175139,0.00001895843,0.00012197,0.0001441369,0.00000453984,0.00008557719,0.00004401759,7.655085e-8],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00001470942,"about_ca_system_score_gemma":0.00003501631,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.000790745,"about_ca_topic_score_gemma":0.003122312,"domain_scores_codex":[0.9990348,0.00009152625,0.0004234107,0.0002332209,0.00007120794,0.0001458624],"domain_scores_gemma":[0.9996272,0.00004774983,0.0001166623,0.0001459911,0.00003457883,0.00002775942],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0004669785,0.0008763258,0.1052918,0.0004119975,0.0001102414,9.563222e-7,0.002916705,6.690938e-7,0.8889706,0.00004743527,0.0001490528,0.0007572201],"study_design_scores_gemma":[0.009268763,0.01395102,0.8782514,0.0004531999,0.0001267089,0.000006939015,0.01477949,0.000003057129,0.08152261,0.000305668,0.001127738,0.0002033828],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9893953,0.009509136,0.00003369586,0.0004498958,0.0000867722,0.0004424865,0.00002720828,0.000003284042,0.00005228189],"genre_scores_gemma":[0.9984547,0.0009146561,0.0003000973,0.000135243,0.00005472213,0.00001520024,0.00009997213,0.000006954243,0.00001848067],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.807448,"threshold_uncertainty_score":0.4792077,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.03825734258173302,"score_gpt":0.302568014734988,"score_spread":0.264310672153255,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}