{"id":"W4407410399","doi":"10.3390/microorganisms13020400","title":"Molecular Epidemiology of Salmonella enterica Serotype Dublin Isolated from 2011 to 2022 from Veal and Dairy Cattle in Pennsylvania","year":2025,"lang":"en","type":"article","venue":"Microorganisms","topic":"Salmonella and Campylobacter epidemiology","field":"Agricultural and Biological Sciences","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Pennsylvania Department of Agriculture; Pennsylvania State University; University of Pennsylvania","keywords":"Salmonella enterica; Biology; Salmonella; Serotype; Antibiotic resistance; Ceftiofur; Virulence; Ampicillin; Microbiology; Plasmid; Enrofloxacin; Multiple drug resistance; Virology; Veterinary medicine; Drug resistance; Gene; Genetics; Antibiotics; Medicine; Ciprofloxacin; Bacteria","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["insufficient_payload"],"consensus_categories":[],"category_scores_codex":[0.0003644282,0.0002127557,0.0006206417,0.00004352711,0.00005371519,0.000008444636,0.0003650588,0.0002670964,0.000972635],"category_scores_gemma":[0.0001882436,0.0001104507,0.00007220646,0.0003370781,0.000092166,0.00003797562,0.0002892591,0.0001936034,0.0001089742],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00003581465,"about_ca_system_score_gemma":0.00001559211,"about_ca_topic_candidate":true,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.01093437,"about_ca_topic_score_gemma":0.001509225,"domain_scores_codex":[0.9979356,0.0004596736,0.0005688426,0.0006012291,0.00005735062,0.0003773281],"domain_scores_gemma":[0.9987097,0.0008441222,0.0001373999,0.0001479198,0.00004570876,0.0001150847],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0001015349,0.00005161274,0.2962916,0.000002821771,0.00002485751,0.000006829899,0.00009908422,0.000003862875,0.6997218,0.0000617553,0.001025829,0.002608387],"study_design_scores_gemma":[0.0002863698,0.0002133044,0.9461139,0.0000299178,0.000020188,0.000002834611,0.0001743484,0.00004121784,0.04619817,0.003895822,0.002830994,0.0001929221],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.993839,0.002243876,0.0001599947,0.002908703,0.0002489041,0.0002250493,0.0002243139,0.00003414707,0.0001160015],"genre_scores_gemma":[0.996337,0.000120127,0.0006112484,0.002498209,0.000056687,0.00001096858,0.0002266388,0.000002665775,0.0001364347],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.6535236,"threshold_uncertainty_score":0.9999406,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01479691628815314,"score_gpt":0.2443473624535458,"score_spread":0.2295504461653926,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}