{"id":"W4407502053","doi":"10.1016/j.bpj.2024.11.1356","title":"BPS2025 - G-Quadruplex recognition by tetraalkylammonium ions: A new paradigm for discrimination between parallel and antiparallel G-quadruplexes","year":2025,"lang":"en","type":"article","venue":"Biophysical Journal","topic":"DNA and Nucleic Acid Chemistry","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"University of Toronto","funders":"","keywords":"Antiparallel (mathematics); G-quadruplex; Ion; Chemistry; Crystallography; Materials science; Physics; Biochemistry; Quantum mechanics; DNA","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003200934,0.0002876469,0.0002619342,0.000179931,0.0002444015,0.0006003306,0.0004609191,0.0006781155,0.002238912],"category_scores_gemma":[0.000295954,0.0002147867,0.0001639649,0.0001093842,0.0004397954,0.0004917251,0.0003428853,0.0008318155,0.000983545],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0002739791,"about_ca_system_score_gemma":0.0002125802,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0002310385,"about_ca_topic_score_gemma":0.000398723,"domain_scores_codex":[0.9998174,0.00003468502,0.00001256939,0.00005155136,0.00005607231,0.00002783508],"domain_scores_gemma":[0.999869,0.00002619017,0.00002362538,0.00001511789,0.00002046844,0.00004561456],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00008703458,0.00001214309,0.00005677259,0.00002404919,0.000002775127,0.0000248979,0.00001327719,0.0000417247,0.9966478,0.0007125705,0.0000992585,0.002277736],"study_design_scores_gemma":[0.00001786348,0.0002038481,0.0003677641,0.000004984227,0.000008363018,0.0001647648,0.00002055942,0.001822665,0.9936718,0.0005495481,0.003158153,0.000009645347],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9517616,0.0009631279,0.03622659,0.000999755,0.0003490451,0.0000740574,0.0002268513,0.0006532194,0.008745831],"genre_scores_gemma":[0.9792094,0.0004166391,0.01485866,0.0005786496,0.00006374547,0.00003896288,0.0002529795,0.00004694687,0.004534103],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002238912,"threshold_uncertainty_score":0.00748986,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01544412978827198,"score_gpt":0.2750232473672465,"score_spread":0.2595791175789745,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}