{"id":"W4407598583","doi":"10.1101/2025.02.14.638355","title":"Transformation of <i>Gardnerella vaginalis</i> with a <i>Bifidobacterium-Escherichia coli</i> shuttle vector plasmid","year":2025,"lang":"en","type":"preprint","venue":"bioRxiv (Cold Spring Harbor Laboratory)","topic":"Reproductive tract infections research","field":"Immunology and Microbiology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Saskatchewan","funders":"","keywords":"Gardnerella vaginalis; Plasmid; Spectinomycin; Biology; Shuttle vector; Microbiology; Transformation (genetics); Escherichia coli; Bifidobacterium; Genetics; Bacterial vaginosis; Gene; Lactobacillus; Antibiotic resistance; Bacteria; Vector (molecular biology); Antibiotics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0005283696,0.0006933589,0.0005923078,0.0004263076,0.0002532138,0.0005580548,0.0006425073,0.0004094084,0.001538424],"category_scores_gemma":[0.0003868314,0.0002991,0.0005769853,0.0006157021,0.0002277002,0.0002159706,0.0005425448,0.0009865494,0.001195896],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003193954,"about_ca_system_score_gemma":0.0003146458,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.001513996,"about_ca_topic_score_gemma":0.001336859,"domain_scores_codex":[0.9994386,0.0001002143,0.0000809722,0.0001201787,0.0001592579,0.0001006724],"domain_scores_gemma":[0.9997087,0.00007322022,0.00008060971,0.00005335085,0.00004531041,0.00003880831],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00003765263,0.00004510579,0.0001666717,0.00006017889,0.000005912598,0.00005494651,0.00002378872,0.00003803214,0.9982795,0.00009696262,0.00009514933,0.001096129],"study_design_scores_gemma":[0.0000202403,0.0003562053,0.003689465,0.00002395275,0.00003280685,0.0004283247,0.00005127644,0.001073891,0.9859299,0.00005201999,0.00832707,0.00001487827],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9086233,0.001427658,0.07150454,0.0003749606,0.0003667324,0.001219987,0.008626629,0.001320729,0.006535321],"genre_scores_gemma":[0.8531187,0.001578969,0.0752703,0.0002340399,0.00005150051,0.0007546781,0.04526832,0.0005314801,0.02319197],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.001538424,"threshold_uncertainty_score":0.005146563,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01158446726490928,"score_gpt":0.2302424461498348,"score_spread":0.2186579788849255,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}