{"id":"W4407732971","doi":"10.1139/gen-2024-0068","title":"AVITI as an alternative to Illumina for low-cost genome-wide genotyping","year":2025,"lang":"en","type":"article","venue":"Genome","topic":"Genomics and Phylogenetic Studies","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval","funders":"","keywords":"Illumina dye sequencing; Biology; Genotyping; DNA sequencing; Computational biology; Whole genome sequencing; Genomics; Genome; Genetics; Biotechnology; Genotype; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.002834216,0.0007721183,0.001125917,0.001893823,0.000750526,0.001843268,0.001370314,0.001161545,0.0165168],"category_scores_gemma":[0.00347121,0.0006994535,0.001049112,0.001835901,0.0004462439,0.000913059,0.00188734,0.001611426,0.009348791],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0005827812,"about_ca_system_score_gemma":0.0008522941,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003655051,"about_ca_topic_score_gemma":0.01063308,"domain_scores_codex":[0.9957458,0.0009545552,0.0001994556,0.001587922,0.001181848,0.0003304475],"domain_scores_gemma":[0.9979814,0.0005571746,0.0002740644,0.0004759708,0.0005310542,0.0001803657],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001625152,0.000125228,0.01252076,0.0009389833,0.0005136463,0.0003963675,0.0006223036,0.001549473,0.6882311,0.007296739,0.03228627,0.253894],"study_design_scores_gemma":[0.0002319178,0.00105717,0.06813335,0.0003495148,0.0005151965,0.005401157,0.0003501327,0.02836222,0.3570808,0.01051013,0.5275874,0.0004210746],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"empirical","genre_scores_codex":[0.127291,0.01140857,0.7335178,0.002542051,0.001403809,0.0009080238,0.02918814,0.03581021,0.05793052],"genre_scores_gemma":[0.169519,0.001837467,0.7534815,0.002073816,0.0003760242,0.001048569,0.03910616,0.00433209,0.02822544],"genre_candidate":"empirical","genre_consensus":null,"teacher_disagreement_score":0.0165168,"threshold_uncertainty_score":0.05525422,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01179301037262937,"score_gpt":0.2685885499531854,"score_spread":0.2567955395805561,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}