{"id":"W4407923105","doi":"10.3390/v17030314","title":"High-Performance Genome Annotation for a Safer and Faster-Developing Phage Therapy","year":2025,"lang":"en","type":"article","venue":"Viruses","topic":"Bacteriophages and microbial interactions","field":"Environmental Science","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa","funders":"","keywords":"SAFER; Genome; Annotation; Computational biology; Biology; Phage therapy; Computer science; Medicine; Genetics; Bacteriophage; Gene","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.003328919,0.001562885,0.001592227,0.00287128,0.001194847,0.002623138,0.001004049,0.001427712,0.00393363],"category_scores_gemma":[0.006934847,0.0007059452,0.002262988,0.003528412,0.000375467,0.001645675,0.001379805,0.001939117,0.005432874],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0009465872,"about_ca_system_score_gemma":0.002119252,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003158028,"about_ca_topic_score_gemma":0.003165884,"domain_scores_codex":[0.997848,0.0006552524,0.0002204529,0.0004816041,0.000600068,0.0001946008],"domain_scores_gemma":[0.996182,0.001405692,0.000551875,0.0005257678,0.001140119,0.0001945766],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.001830507,0.0004305033,0.02083953,0.005454735,0.0004724046,0.000922047,0.00155804,0.01435349,0.6450584,0.004672753,0.03582556,0.268582],"study_design_scores_gemma":[0.0002015957,0.0008709216,0.07204405,0.001815412,0.0007410808,0.002439598,0.001885834,0.152987,0.4182687,0.01118535,0.3370174,0.0005430948],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.196522,0.009743751,0.6791887,0.002604029,0.0008059162,0.0006189578,0.05303825,0.04811819,0.009360332],"genre_scores_gemma":[0.1882049,0.00371897,0.6728616,0.0006573919,0.0001316663,0.0005275144,0.1237113,0.006773151,0.003413488],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.00393363,"threshold_uncertainty_score":0.01760525,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02199442932093388,"score_gpt":0.2726934517653062,"score_spread":0.2506990224443724,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}