{"id":"W4407932322","doi":"10.1139/cjm-2024-0193","title":"Surveillance of <i>Clostridioides difficile</i> in Canadian retail meat and genomic linkages to community-associated human clinical infections in Canada","year":2025,"lang":"en","type":"article","venue":"Canadian Journal of Microbiology","topic":"Clostridium difficile and Clostridium perfringens research","field":"Medicine","cited_by":3,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Public Health Agency of Canada","funders":"Public Health Agency of Canada","keywords":"Multilocus sequence typing; Ribotyping; Biology; Clostridioides; Clindamycin; Microbiology; Transmission (telecommunications); Polymerase chain reaction; Genotype; Gene; Genetics; Antibiotics","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":true,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0003590882,0.0003411215,0.0002645557,0.001746113,0.002055744,0.001003286,0.0008380089,0.0003036889,0.001669187],"category_scores_gemma":[0.001038264,0.0002650081,0.0003319523,0.003450261,0.0004718452,0.0001828381,0.0006151534,0.000389895,0.0001211738],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.01679467,"about_ca_system_score_gemma":0.02135373,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.994934,"about_ca_topic_score_gemma":0.9964706,"domain_scores_codex":[0.9993449,0.00003130317,0.00003189757,0.0001101638,0.0002449379,0.0002367793],"domain_scores_gemma":[0.9986094,0.00004031265,0.0002161203,0.00001977881,0.00088098,0.0002334843],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.00009478744,0.00003228716,0.9852755,0.00008007963,0.00003969654,0.0002555944,0.0008407578,0.0001811986,0.001915582,0.0001062605,0.001312996,0.009865236],"study_design_scores_gemma":[0.000004393179,0.00003164226,0.9959441,0.00004508971,0.00002659369,0.0001617198,0.001503678,0.0002787148,0.0002896694,0.00001567428,0.001689574,0.000009101533],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9904417,0.0008709367,0.0002603889,0.0003486151,0.00001019657,0.00005627473,0.004186831,0.00002548802,0.003799599],"genre_scores_gemma":[0.9965436,0.000652589,0.0004594849,0.0001363063,0.000003570274,0.00001032538,0.001480748,0.000006529482,0.0007068479],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.01679467,"threshold_uncertainty_score":0.1218544,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02848296413512636,"score_gpt":0.3023969019946203,"score_spread":0.2739139378594939,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}