{"id":"W4407989743","doi":"10.1016/j.psj.2025.104957","title":"Phylogeny of multiple genomic regions of infectious laryngotracheitis virus in Turkish poultry flocks","year":2025,"lang":"en","type":"article","venue":"Poultry Science","topic":"Plant Virus Research Studies","field":"Agricultural and Biological Sciences","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"National Institute of General Medical Sciences; Istanbul Üniversitesi-Cerrahpasa; Kansas State University","keywords":"Flock; Virology; Phylogenetics; Turkish; Biology; Genetics; Gene; Ecology","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001552242,0.0002867431,0.0002899747,0.001104073,0.0003295336,0.0004803945,0.0002174631,0.0003255144,0.0003793988],"category_scores_gemma":[0.0003052659,0.0002241256,0.0003699494,0.000507042,0.0003229989,0.0002105413,0.0002462918,0.0003216383,0.0002316855],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003087423,"about_ca_system_score_gemma":0.000220302,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.002673498,"about_ca_topic_score_gemma":0.002230209,"domain_scores_codex":[0.9998029,0.00002107059,0.00001707016,0.00008235776,0.00003040259,0.00004627617],"domain_scores_gemma":[0.9997036,0.00005094608,0.0001025988,0.00001494949,0.00006409546,0.00006373322],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"observational","study_design_scores_codex":[0.0007942815,0.0001335765,0.2785791,0.0001962476,0.00009661446,0.000786369,0.001536937,0.0005947234,0.7030697,0.000171016,0.0001659377,0.01387558],"study_design_scores_gemma":[0.00001334334,0.0004209006,0.9883285,0.00003591801,0.00007555795,0.001270703,0.0006840171,0.0008559727,0.006795289,0.00006637297,0.001439121,0.00001420071],"study_design_candidate":"observational","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9988934,0.0002364925,0.000319808,0.00001003747,0.000004878201,0.000009736546,0.0002127033,0.000005149745,0.0003078581],"genre_scores_gemma":[0.9971972,0.0001488642,0.000919526,0.00002546481,0.000004562425,0.0000133082,0.001448212,0.000005973757,0.0002368669],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.002673498,"threshold_uncertainty_score":0.0053159,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.02093818206233168,"score_gpt":0.2628050006043596,"score_spread":0.2418668185420279,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}