{"id":"W4408023952","doi":"10.1128/spectrum.03012-24","title":"Novel application of ribonucleoprotein-mediated CRISPR-Cas9 gene editing in plant pathogenic oomycete species","year":2025,"lang":"en","type":"article","venue":"Microbiology Spectrum","topic":"CRISPR and Genetic Engineering","field":"Biochemistry, Genetics and Molecular Biology","cited_by":0,"is_retracted":false,"has_abstract":true,"ca_institutions":"Université Laval; Natural Resources Canada; Canadian Forest Service; University of British Columbia","funders":"Natural Resources Canada; FPInnovations; Natural Sciences and Engineering Research Council of Canada; Canadian Food Inspection Agency; Genome Canada","keywords":"CRISPR; Oomycete; Biology; Cas9; Genome editing; Genetics; Phytophthora cactorum; Gene; Phytophthora; Pythium ultimum; Rhizoctonia solani; Botany","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001643515,0.0001689918,0.0002294034,0.0001371902,0.00003550889,0.000005782958,0.0001999119,0.0002202851,0.00001259623],"category_scores_gemma":[0.00005370688,0.0001762568,0.00007644867,0.0001905855,0.0000900044,0.00000186865,0.0001305772,0.0001277771,0.000006975883],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.00002569832,"about_ca_system_score_gemma":0.00004399144,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.00007955821,"about_ca_topic_score_gemma":0.0003937006,"domain_scores_codex":[0.9989244,0.00002513813,0.0003394216,0.0003717648,0.00002872431,0.0003105649],"domain_scores_gemma":[0.9995261,0.00001836254,0.00008692482,0.0003127072,0.00002781798,0.00002805299],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.00004036507,0.00005111957,0.005052878,0.00003129616,0.00003938355,0.000001981495,0.00002555411,0.0002092878,0.9938927,0.0001554666,0.0002362947,0.000263693],"study_design_scores_gemma":[0.0006594194,0.00007864775,0.01395638,0.00002047432,0.00001354981,0.00003452195,0.00005366047,0.0002018697,0.9713663,0.00003776722,0.0134231,0.0001542676],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9376823,0.001454044,0.05907009,0.0003430632,0.0002808526,0.0003425035,0.000309826,0.00002161708,0.0004957342],"genre_scores_gemma":[0.9969092,0.0001050591,0.001784216,0.0001219925,0.0001591495,0.00003107052,0.000679582,0.00001528607,0.0001944519],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.05922692,"threshold_uncertainty_score":0.7187543,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004090178168757901,"score_gpt":0.2340967288520549,"score_spread":0.230006550683297,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}