{"id":"W4408161909","doi":"10.1111/1755-0998.14084","title":"<scp>RepeatOBserver</scp> : Tandem Repeat Visualisation and Putative Centromere Detection","year":2025,"lang":"en","type":"article","venue":"Molecular Ecology Resources","topic":"Chromosomal and Genetic Variations","field":"Agricultural and Biological Sciences","cited_by":15,"is_retracted":false,"has_abstract":true,"ca_institutions":"Canada's Michael Smith Genome Sciences Centre; Vancouver Island University; University of British Columbia, Okanagan Campus; University of British Columbia","funders":"Natural Sciences and Engineering Research Council of Canada; Weston Family Foundation","keywords":"Biology; Centromere; Tandem repeat; Computational biology; Tandem; Genetics; Visualization; Genome; Chromosome; Gene; Computer science; Artificial intelligence","routes":{"ca_aff":true,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.001033656,0.002457185,0.001188227,0.002967368,0.0005482571,0.002009981,0.002217384,0.001805247,0.06907416],"category_scores_gemma":[0.004537576,0.0008305114,0.001518358,0.002120195,0.0005737058,0.002317018,0.003106447,0.002177984,0.02829708],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004826448,"about_ca_system_score_gemma":0.0006077226,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.003555424,"about_ca_topic_score_gemma":0.005157059,"domain_scores_codex":[0.9993131,0.00006924369,0.00003745387,0.000146382,0.00031148,0.0001223723],"domain_scores_gemma":[0.9984306,0.0006384716,0.0001459726,0.0003006133,0.0003105346,0.0001738554],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"not_applicable","study_design_gemma":"simulation_or_modeling","study_design_scores_codex":[0.0008128104,0.0001163869,0.004175083,0.002701134,0.0003439964,0.001373878,0.0009178892,0.003124258,0.06660229,0.004873462,0.781271,0.133688],"study_design_scores_gemma":[0.000508408,0.0002093131,0.02506471,0.0009525875,0.0001560417,0.00299351,0.0003940549,0.1045176,0.1497617,0.02350345,0.6913667,0.0005718769],"study_design_candidate":"simulation_or_modeling","study_design_consensus":null,"genre_codex":"software","genre_gemma":"software","genre_scores_codex":[0.01155255,0.001025656,0.2185409,0.0006294942,0.0003898177,0.0003145006,0.1092601,0.646155,0.01213203],"genre_scores_gemma":[0.1070927,0.001176714,0.4175599,0.001278903,0.0002801759,0.001678581,0.2367376,0.2149278,0.01926767],"genre_candidate":"software","genre_consensus":"software","teacher_disagreement_score":0.06907416,"threshold_uncertainty_score":0.2310761,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.006830929840105551,"score_gpt":0.2130679990724933,"score_spread":0.2062370692323877,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}