{"id":"W4408369930","doi":"10.1002/pld3.70053","title":"Suppression of Chorismate Mutase 1 in Hybrid Poplar to Investigate Potential Redundancy in the Supply of Lignin Precursors","year":2025,"lang":"en","type":"article","venue":"Plant Direct","topic":"Plant Gene Expression Analysis","field":"Biochemistry, Genetics and Molecular Biology","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Ottawa; University of British Columbia","funders":"Biological and Environmental Research; Great Lakes Bioenergy Research Center; Center for Bioenergy Innovation; Office of Science; Korea Institute of Science and Technology; Battelle; U.S. Department of Energy","keywords":"Xylem; Chorismate mutase; Shikimate pathway; Lignin; Biochemistry; Metabolite; Biology; Gene isoform; Gene; Chemistry; Botany; Biosynthesis","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0004270368,0.0001386777,0.0002756668,0.0002537542,0.00002272863,0.000009118789,0.0003492357,0.00008150137,0.000008721661],"category_scores_gemma":[0.0002131385,0.0001051143,0.00008337021,0.0003234198,0.00004142182,0.000004090253,0.000125035,0.0000956814,0.000002044731],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.000008992381,"about_ca_system_score_gemma":0.00007236002,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003113537,"about_ca_topic_score_gemma":0.000185222,"domain_scores_codex":[0.9986884,0.0002584919,0.000381769,0.0002976471,0.0001702651,0.000203409],"domain_scores_gemma":[0.9994241,0.00004414054,0.0001078425,0.0003476898,0.0000288251,0.0000474315],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002257082,0.00009951597,0.007325429,0.00004171128,0.00003417613,0.00003326277,0.0001640688,0.000585444,0.9221851,0.000007322091,0.0690683,0.0002299165],"study_design_scores_gemma":[0.0003946424,0.00006318885,0.003095998,0.0002552927,0.00002870471,0.000008997386,0.00008639175,0.0002662096,0.990265,0.00004090638,0.005387483,0.0001072545],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9968256,0.0003626612,0.00002055531,0.0002873524,0.0001334762,0.0002320634,0.0006952261,0.000004803695,0.001438199],"genre_scores_gemma":[0.9985801,0.0002303587,0.0002055487,0.000145778,0.00002502182,0.00002783087,0.0005358112,0.000007411259,0.0002421218],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.06807978,"threshold_uncertainty_score":0.4286437,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.004565931024830936,"score_gpt":0.2376890682945,"score_spread":0.233123137269669,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}