{"id":"W4408389176","doi":"10.1021/acssynbio.4c00806","title":"XanthoMoClo─A Robust Modular Cloning Genetic Toolkit for the Genera <i>Xanthobacter</i> and <i>Roseixanthobacter</i>","year":2025,"lang":"en","type":"article","venue":"ACS Synthetic Biology","topic":"Plant Pathogenic Bacteria Studies","field":"Agricultural and Biological Sciences","cited_by":4,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Natural Sciences and Engineering Research Council of Canada; Defense Advanced Research Projects Agency; Government of Canada","keywords":"Modular design; Cloning (programming); Synthetic biology; Computational biology; Biology; Programming language; Computer science","routes":{"ca_aff":false,"ca_fund":true,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0009460981,0.001113277,0.0006819561,0.001282146,0.0004663246,0.0007848809,0.001159046,0.0005356547,0.004534474],"category_scores_gemma":[0.001065567,0.000862031,0.001107609,0.0006229138,0.0003766707,0.0007822463,0.001885912,0.001339803,0.005250472],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0003625527,"about_ca_system_score_gemma":0.0006800172,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0008751095,"about_ca_topic_score_gemma":0.001509261,"domain_scores_codex":[0.9991562,0.00007981357,0.0001179945,0.0002321139,0.0002992066,0.0001145951],"domain_scores_gemma":[0.9993908,0.0001008611,0.0002171434,0.0001467974,0.00005919951,0.00008511894],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.0002347625,0.00006572774,0.001254663,0.0005012064,0.00005366087,0.0002675784,0.0001757927,0.0005586999,0.9628618,0.001404682,0.003253632,0.02936773],"study_design_scores_gemma":[0.0000578549,0.0003974056,0.005404973,0.0001656884,0.0001186118,0.001240107,0.00008401951,0.004712414,0.8629743,0.0007334937,0.1239919,0.0001193198],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"methods","genre_gemma":"methods","genre_scores_codex":[0.2144552,0.002214287,0.6532635,0.0007475804,0.0004441145,0.001677873,0.02647369,0.08872496,0.01199878],"genre_scores_gemma":[0.3029201,0.002659237,0.5663584,0.0004819298,0.0001040741,0.003585781,0.08019865,0.01425658,0.02943521],"genre_candidate":"methods","genre_consensus":"methods","teacher_disagreement_score":0.004534474,"threshold_uncertainty_score":0.01516938,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.01666918635211834,"score_gpt":0.2167187781191478,"score_spread":0.2000495917670295,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}