{"id":"W4408417406","doi":"10.20517/mrr.2024.91","title":"Milk matters: seeding gut ecosystems and shaping microbiota rivalries","year":2025,"lang":"en","type":"article","venue":"Microbiome Research Reports","topic":"Gut microbiota and health","field":"Biochemistry, Genetics and Molecular Biology","cited_by":1,"is_retracted":false,"has_abstract":true,"ca_institutions":"University of Manitoba; Children's Hospital Research Institute of Manitoba","funders":"","keywords":"Breastfeeding; Gut flora; Microbiome; Biology; Colonization; Gut microbiome; Medicine; Immunology; Pediatrics; Ecology; Bioinformatics","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":false,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"codex-gemma-dda1882f352a","candidate_categories":["metaepi_narrow"],"consensus_categories":[],"category_scores_codex":[0.002318318,0.0002526654,0.0003159266,0.0004887108,0.0005202346,0.0002384794,0.0002360009,0.0002895231,0.00003696631],"category_scores_gemma":[0.000172149,0.0002500563,0.0001015158,0.0004768839,0.0003426876,0.00001180857,0.0006666189,0.0003310982,0.00002254308],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0001137458,"about_ca_system_score_gemma":0.0004998909,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.0003591564,"about_ca_topic_score_gemma":0.0002749398,"domain_scores_codex":[0.9972517,0.0001962083,0.0005687177,0.000895794,0.0002082789,0.0008792522],"domain_scores_gemma":[0.9985531,0.00003912325,0.0001274493,0.0006830984,0.000431566,0.0001656858],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"not_applicable","study_design_scores_codex":[0.00002861797,0.0000431688,0.002795634,0.0004557371,0.00007489388,0.0000802073,0.00009453439,5.523826e-7,0.8964422,0.00004236141,0.09955272,0.0003894076],"study_design_scores_gemma":[0.0003812191,0.0001020912,0.003680436,0.000417516,0.00001431004,0.001027817,0.0003296396,0.000006153579,0.3918449,0.0001046826,0.6018004,0.0002908506],"study_design_candidate":"bench_or_experimental","study_design_consensus":null,"genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.986553,0.006716199,0.0001436945,0.003539972,0.0004752014,0.0006750014,0.00003761462,0.00003879804,0.001820585],"genre_scores_gemma":[0.9909596,0.0006792936,0.0006679759,0.0007318545,0.0001996258,0.00003579168,0.0001756318,0.00004266882,0.006507585],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.5045973,"threshold_uncertainty_score":0.9999952,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.04448722893456771,"score_gpt":0.3700123409251032,"score_spread":0.3255251119905355,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}