{"id":"W4408468438","doi":"10.1139/gen-2024-0162","title":"Genome assembly, analysis, and mining of <i>Kocuria flava</i> NIO_001: a thiopeptide antibiotic synthesizing bacterium isolated from marine sponge","year":2025,"lang":"en","type":"article","venue":"Genome","topic":"Microbial Natural Products and Biosynthesis","field":"Medicine","cited_by":2,"is_retracted":false,"has_abstract":true,"ca_institutions":"","funders":"Council of Scientific and Industrial Research, India","keywords":"Biology; Sponge; Bacteria; Genome; Microbiology; Antibiotics; Genetics; Gene; Botany","routes":{"ca_aff":false,"ca_fund":false,"ca_venue":true,"about_ca":false,"invisible_to_affiliation_only":true},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0002611985,0.00105517,0.0008807665,0.00128343,0.0006362558,0.0006358227,0.000464736,0.0004925317,0.0009264242],"category_scores_gemma":[0.0006515805,0.0002813508,0.00116706,0.002298324,0.0002180644,0.0003890566,0.0004624244,0.0007336704,0.001017903],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.0004690156,"about_ca_system_score_gemma":0.001179487,"about_ca_topic_candidate":false,"about_ca_topic_consensus":false,"about_ca_topic_score_codex":0.006389477,"about_ca_topic_score_gemma":0.007453412,"domain_scores_codex":[0.9997209,0.00002291741,0.00003427219,0.00010413,0.00007644421,0.00004131729],"domain_scores_gemma":[0.9996917,0.00005404881,0.00008394821,0.00002876213,0.00009250547,0.00004909551],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"bench_or_experimental","study_design_gemma":"bench_or_experimental","study_design_scores_codex":[0.000846818,0.0001716775,0.01198283,0.001458973,0.00009563132,0.001091675,0.0004610059,0.001061004,0.9426677,0.0002268452,0.002530671,0.03740517],"study_design_scores_gemma":[0.000253878,0.001082058,0.3837068,0.0004864122,0.001093803,0.005400958,0.001533756,0.01600885,0.4801743,0.0009622838,0.1090299,0.0002669374],"study_design_candidate":"bench_or_experimental","study_design_consensus":"bench_or_experimental","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.8501735,0.005455913,0.01992927,0.0007428314,0.0001297619,0.0005579197,0.1163096,0.001859995,0.004841188],"genre_scores_gemma":[0.5331501,0.004223037,0.09683457,0.0003778486,0.00005138978,0.000625648,0.358192,0.0009277773,0.005617712],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.006389477,"threshold_uncertainty_score":0.01270455,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.007887868954155998,"score_gpt":0.2248694397992178,"score_spread":0.2169815708450618,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}