{"id":"W4408590324","doi":"10.1016/j.jcf.2025.02.009","title":"Genomic analysis of the liverpool epidemic strain of pseudomonas aeruginosa infecting persons with cystic fibrosis reveals likely Canadian origins","year":2025,"lang":"en","type":"article","venue":"Journal of Cystic Fibrosis","topic":"Cystic Fibrosis Research Advances","field":"Medicine","cited_by":0,"is_retracted":false,"has_abstract":false,"ca_institutions":"Calgary Laboratory Services; McMaster University; Alberta Health Services; Cystic Fibrosis Canada; University of Ottawa; University of Calgary","funders":"","keywords":"Cystic fibrosis; Pseudomonas aeruginosa; Medicine; Strain (injury); Microbiology; Genetics; Internal medicine; Biology; Bacteria","routes":{"ca_aff":true,"ca_fund":false,"ca_venue":false,"about_ca":true,"invisible_to_affiliation_only":false},"retraction":null,"screen":null,"direct_labels":[],"prediction":{"model_version":"metacan-v3-hybrid-931329e0061c","candidate_categories":[],"consensus_categories":[],"category_scores_codex":[0.0001952352,0.0003634763,0.0003374653,0.001459919,0.001453933,0.0008493529,0.0003792903,0.0004634647,0.003146141],"category_scores_gemma":[0.001373712,0.000177539,0.0004270623,0.002806213,0.0004805108,0.0001353077,0.0005727799,0.0005745071,0.0002918658],"about_ca_system_candidate":false,"about_ca_system_consensus":false,"about_ca_system_score_codex":0.002844205,"about_ca_system_score_gemma":0.004913552,"about_ca_topic_candidate":true,"about_ca_topic_consensus":true,"about_ca_topic_score_codex":0.7790481,"about_ca_topic_score_gemma":0.8012378,"domain_scores_codex":[0.9995474,0.00002507794,0.00001812816,0.00008305027,0.0001305424,0.0001956901],"domain_scores_gemma":[0.9993427,0.0001158009,0.0001090245,0.00002840105,0.0002416817,0.0001622706],"domain_codex":null,"domain_gemma":null,"domain_candidate":null,"domain_consensus":null,"study_design_codex":"observational","study_design_gemma":"observational","study_design_scores_codex":[0.001408289,0.0001197155,0.8418013,0.0002210612,0.0001052909,0.003867226,0.006656319,0.00054863,0.1075076,0.001539088,0.002408587,0.0338168],"study_design_scores_gemma":[0.00001335749,0.00009750978,0.9906283,0.00003184331,0.00003734933,0.001002598,0.003121594,0.000268039,0.001759313,0.0001279482,0.002896926,0.00001520511],"study_design_candidate":"observational","study_design_consensus":"observational","genre_codex":"empirical","genre_gemma":"empirical","genre_scores_codex":[0.9913776,0.0002784739,0.0004955819,0.000515986,0.00001278977,0.00004523697,0.004041902,0.00001444358,0.003218108],"genre_scores_gemma":[0.9958504,0.0003528122,0.0008711133,0.0001941475,0.00001347015,0.00001083088,0.001671867,0.000009829241,0.001025525],"genre_candidate":"empirical","genre_consensus":"empirical","teacher_disagreement_score":0.2209519,"threshold_uncertainty_score":0.4445062,"prediction_status":"machine_predicted_unvalidated"},"machine_scores":{"provisional":true,"baseline":true,"maturity_gate_passed":false,"score_opus":0.0125185192945759,"score_gpt":0.2881922177689079,"score_spread":0.275673698474332,"validation_status":"score_only:v0-immature-baseline","note":"Baseline scores from an immature model (maturity gate not passed). Scores rank; they never assert a category."}}